Xu B - Search Results

1

RNA-binding protein RBM5 plays an essential role in acute myeloid leukemia by activating the oncogenic protein HOXA9.

Zhang M, Hyle J, Chen X, Xin Y, Jin Y, Zhang J, Yang X, Chen X, Wright S, Liu Z, Rosikiewicz W, Xu B, He L, Liu H, Ping N, Wu D, Wen F, Li C, Xu P. Zhang M, et al. Among authors: xu p, xu b. Genome Biol. 2024 Jan 12;25(1):16. doi: 10.1186/s13059-023-03149-8. Genome Biol. 2024. PMID: 38216972 Free PMC article.

2

Mouse medulloblastoma driven by CRISPR activation of cellular Myc.

Vo BT, Kwon JA, Li C, Finkelstein D, Xu B, Orr BA, Sherr CJ, Roussel MF. Vo BT, et al. Among authors: xu b. Sci Rep. 2018 Jun 7;8(1):8733. doi: 10.1038/s41598-018-24956-1. Sci Rep. 2018. PMID: 29880921 Free PMC article.

3

Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping.

Hyle J, Zhang Y, Wright S, Xu B, Shao Y, Easton J, Tian L, Feng R, Xu P, Li C. Hyle J, et al. Among authors: xu p, xu b. Nucleic Acids Res. 2019 Jul 26;47(13):6699-6713. doi: 10.1093/nar/gkz462. Nucleic Acids Res. 2019. PMID: 31127282 Free PMC article.

4

Functional interrogation of HOXA9 regulome in MLLr leukemia via reporter-based CRISPR/Cas9 screen.

Zhang H, Zhang Y, Zhou X, Wright S, Hyle J, Zhao L, An J, Zhao X, Shao Y, Xu B, Lee HM, Chen T, Zhou Y, Chen X, Lu R, Li C. Zhang H, et al. Among authors: xu b. Elife. 2020 Oct 1;9:e57858. doi: 10.7554/eLife.57858. Elife. 2020. PMID: 33001025 Free PMC article.

5

FBXO11-mediated proteolysis of BAHD1 relieves PRC2-dependent transcriptional repression in erythropoiesis.

Xu P, Scott DC, Xu B, Yao Y, Feng R, Cheng L, Mayberry K, Wang YD, Bi W, Palmer LE, King MT, Wang H, Li Y, Fan Y, Alpi AF, Li C, Peng J, Papizan J, Pruett-Miller SM, Spallek R, Bassermann F, Cheng Y, Schulman BA, Weiss MJ. Xu P, et al. Among authors: xu b. Blood. 2021 Jan 14;137(2):155-167. doi: 10.1182/blood.2020007809. Blood. 2021. PMID: 33156908 Free PMC article.

6

MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors.

Williams J, Xu B, Putnam D, Thrasher A, Li C, Yang J, Chen X. Williams J, et al. Among authors: xu b. Genome Biol. 2021 Jan 19;22(1):24. doi: 10.1186/s13059-020-02220-y. Genome Biol. 2021. PMID: 33461601 Free PMC article.

7

CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes.

Djekidel MN, Rosikiewicz W, Peng JC, Kanneganti TD, Hui Y, Jin H, Hedges D, Schreiner P, Fan Y, Wu G, Xu B. Djekidel MN, et al. Among authors: xu b. bioRxiv [Preprint]. 2021 Aug 5:2021.05.14.444026. doi: 10.1101/2021.05.14.444026. bioRxiv. 2021. PMID: 34075382 Free PMC article. Preprint.

8

Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity.

Zong X, Hao X, Xu B, Crawford JC, Wright S, Li J, Zhang Y, Bai L, He M, Jiang M, Fan Y, Connelly JP, Pruett-Miller SM, Berns H, Janke L, Li C, Feng Y. Zong X, et al. Among authors: xu b. J Exp Med. 2021 Aug 2;218(8):e20202415. doi: 10.1084/jem.20202415. Epub 2021 Jun 4. J Exp Med. 2021. PMID: 34086055 Free PMC article.

9

Acute depletion of CTCF rewires genome-wide chromatin accessibility.

Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Xu B, et al. Genome Biol. 2021 Aug 24;22(1):244. doi: 10.1186/s13059-021-02466-0. Genome Biol. 2021. PMID: 34429148 Free PMC article.

10

PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands.

Wang X, Rosikiewicz W, Sedkov Y, Martinez T, Hansen BS, Schreiner P, Christensen J, Xu B, Pruett-Miller SM, Helin K, Herz HM. Wang X, et al. Among authors: xu b. Life Sci Alliance. 2021 Oct 19;5(1):e202101228. doi: 10.26508/lsa.202101228. Print 2022 Jan. Life Sci Alliance. 2021. PMID: 34667079 Free PMC article.

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