Wipat A - Search Results

1

A method for the systematic selection of enzyme panel candidates by solving the maximum diversity problem.

Atallah C, James K, Ou Z, Skelton J, Markham D, Burridge MS, Finnigan J, Charnock S, Wipat A. Atallah C, et al. Among authors: wipat a. Biosystems. 2024 Feb;236:105105. doi: 10.1016/j.biosystems.2023.105105. Epub 2023 Dec 29. Biosystems. 2024. PMID: 38160995

2

Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond.

Sadegh S, Skelton J, Anastasi E, Maier A, Adamowicz K, Möller A, Kriege NM, Kronberg J, Haller T, Kacprowski T, Wipat A, Baumbach J, Blumenthal DB. Sadegh S, et al. Among authors: wipat a. Nat Commun. 2023 Mar 25;14(1):1662. doi: 10.1038/s41467-023-37349-4. Nat Commun. 2023. PMID: 36966134 Free PMC article.

3

Transcriptional biomarker discovery toward building a load stress reporting system for engineered Escherichia coli strains.

Huang Y, Wipat A, Bacardit J. Huang Y, et al. Among authors: wipat a. Biotechnol Bioeng. 2024 Jan;121(1):355-365. doi: 10.1002/bit.28567. Epub 2023 Oct 9. Biotechnol Bioeng. 2024. PMID: 37807718 Free PMC article.

4

GENETTA: a Network-Based Tool for the Analysis of Complex Genetic Designs.

Crowther M, Wipat A, Goñi-Moreno Á. Crowther M, et al. Among authors: wipat a. ACS Synth Biol. 2023 Dec 15;12(12):3766-3770. doi: 10.1021/acssynbio.3c00333. Epub 2023 Nov 14. ACS Synth Biol. 2023. PMID: 37963232

5

BioRxToolbox: a computational framework to streamline genetic circuit design in molecular data communications.

Durmaz MG, Tulluk N, Aksoy RD, Yilmaz HB, Yang B, Wipat A, Pusane AE, Mısırlı G, Tugcu T. Durmaz MG, et al. Among authors: wipat a. Synth Biol (Oxf). 2024 Nov 7;9(1):ysae015. doi: 10.1093/synbio/ysae015. eCollection 2024. Synth Biol (Oxf). 2024. PMID: 39669892 Free PMC article.

6

Multiplex detection of the big five carbapenemase genes using solid-phase recombinase polymerase amplification.

Johnson CL, Setterfield MA, Hassanain WA, Wipat A, Pocock M, Faulds K, Graham D, Keegan N. Johnson CL, et al. Among authors: wipat a. Analyst. 2024 Feb 26;149(5):1527-1536. doi: 10.1039/d3an01747h. Analyst. 2024. PMID: 38265775 Free article.

7

A knowledge integration strategy for the selection of a robust multi-stress biomarkers panel for Bacillus subtilis.

Huang Y, Sinha N, Wipat A, Bacardit J. Huang Y, et al. Among authors: wipat a. Synth Syst Biotechnol. 2022 Dec 13;8(1):97-106. doi: 10.1016/j.synbio.2022.12.001. eCollection 2023 Mar. Synth Syst Biotechnol. 2022. PMID: 36605706 Free PMC article.

8

Computational intelligence and machine learning in bioinformatics and computational biology.

Chetty M, Hallinan J, Ruz GA, Wipat A. Chetty M, et al. Among authors: wipat a. Biosystems. 2022 Dec;222:104792. doi: 10.1016/j.biosystems.2022.104792. Epub 2022 Oct 6. Biosystems. 2022. PMID: 36209915 No abstract available.

9

A Network Approach to Genetic Circuit Designs.

Crowther M, Wipat A, Goñi-Moreno Á. Crowther M, et al. Among authors: wipat a. ACS Synth Biol. 2022 Sep 16;11(9):3058-3066. doi: 10.1021/acssynbio.2c00255. Epub 2022 Aug 31. ACS Synth Biol. 2022. PMID: 36044984 Free PMC article.

10

Integration of probabilistic functional networks without an external Gold Standard.

James K, Alsobhe A, Cockell SJ, Wipat A, Pocock M. James K, et al. Among authors: wipat a. BMC Bioinformatics. 2022 Jul 25;23(1):302. doi: 10.1186/s12859-022-04834-4. BMC Bioinformatics. 2022. PMID: 35879662 Free PMC article.

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