Prakash A - Search Results

1

Comprehensive mapping of mutations in TDP-43 and α-Synuclein that affect stability and binding.

Alamri SH, Haque S, Alghamdi BS, Tayeb HO, Azhari S, Farsi RM, Elmokadem A, Alamri TA, Harakeh S, Prakash A, Kumar V. Alamri SH, et al. Among authors: prakash a. J Biomol Struct Dyn. 2023 Dec 21:1-13. doi: 10.1080/07391102.2023.2293258. Online ahead of print. J Biomol Struct Dyn. 2023. PMID: 38126188

2

Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: a molecular dynamics simulation study.

Prakash A, Kumar V, Pandey P, Bharti DR, Vishwakarma P, Singh R, Hassan MI, Lynn AM. Prakash A, et al. J Biomol Struct Dyn. 2018 Aug;36(10):2605-2617. doi: 10.1080/07391102.2017.1364670. Epub 2017 Aug 20. J Biomol Struct Dyn. 2018. PMID: 28782426

3

Comparative analysis of thermal unfolding simulations of RNA recognition motifs (RRMs) of TAR DNA-binding protein 43 (TDP-43).

Prakash A, Kumar V, Meena NK, Hassan MI, Lynn AM. Prakash A, et al. J Biomol Struct Dyn. 2019 Jan;37(1):178-194. doi: 10.1080/07391102.2017.1422026. Epub 2018 Jan 10. J Biomol Struct Dyn. 2019. PMID: 29279008

4

Alterations in local stability and dynamics of A4V SOD1 in the presence of trifluoroethanol.

Kumar V, Prakash A, Lynn AM. Kumar V, et al. Among authors: prakash a. Biopolymers. 2018 Mar;109(3):e23102. doi: 10.1002/bip.23102. Epub 2018 Jan 25. Biopolymers. 2018. PMID: 29369331

5

TFE-induced local unfolding and fibrillation of SOD1: bridging the experiment and simulation studies.

Kumar V, Prakash A, Pandey P, Lynn AM, Hassan MI. Kumar V, et al. Among authors: prakash a. Biochem J. 2018 May 18;475(10):1701-1719. doi: 10.1042/BCJ20180085. Biochem J. 2018. PMID: 29686043

6

Insights into the DNA binding induced thermal stabilization of transcription factor FOXP3.

Prakash A, Kumar V, Lynn AM, Haque R. Prakash A, et al. J Biomol Struct Dyn. 2019 Jun;37(9):2219-2229. doi: 10.1080/07391102.2018.1486228. Epub 2018 Nov 13. J Biomol Struct Dyn. 2019. PMID: 30047314

7

Exploring the aggregation-prone regions from structural domains of human TDP-43.

Kumar V, Wahiduzzaman, Prakash A, Tomar AK, Srivastava A, Kundu B, Lynn AM, Imtaiyaz Hassan M. Kumar V, et al. Among authors: prakash a. Biochim Biophys Acta Proteins Proteom. 2019 Mar;1867(3):286-296. doi: 10.1016/j.bbapap.2018.10.008. Epub 2018 Oct 11. Biochim Biophys Acta Proteins Proteom. 2019. PMID: 30315897

8

Characterization of heterogeneous intermediate ensembles on the guanidinium chloride-induced unfolding pathway of β-lactoglobulin.

Pandey P, Meena NK, Prakash A, Kumar V, Lynn AM, Ahmad F. Pandey P, et al. Among authors: prakash a. J Biomol Struct Dyn. 2020 Mar;38(4):1042-1053. doi: 10.1080/07391102.2019.1593245. Epub 2019 Apr 2. J Biomol Struct Dyn. 2020. PMID: 30880641

9

Delineating the effect of mutations on the conformational dynamics of N-terminal domain of TDP-43.

Kumar V, Pandey P, Idrees D, Prakash A, Lynn AM. Kumar V, et al. Among authors: prakash a. Biophys Chem. 2019 Jul;250:106174. doi: 10.1016/j.bpc.2019.106174. Epub 2019 Apr 22. Biophys Chem. 2019. PMID: 31035038

10

Structure-based virtual screening, molecular dynamics simulation and MM-PBSA toward identifying the inhibitors for two-component regulatory system protein NarL of Mycobacterium Tuberculosis.

Kumar N, Srivastava R, Prakash A, Lynn AM. Kumar N, et al. Among authors: prakash a. J Biomol Struct Dyn. 2020 Jul;38(11):3396-3410. doi: 10.1080/07391102.2019.1657499. Epub 2019 Aug 26. J Biomol Struct Dyn. 2020. PMID: 31422761

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