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DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard.
Wright A, Wilkinson MD, Mungall C, Cain S, Richards S, Sternberg P, Provin E, Jacobs JL, Geib S, Raciti D, Yook K, Stein L, Molik DC. Wright A, et al. Among authors: jacobs jl. bioRxiv [Preprint]. 2023 Dec 20:2023.11.29.569306. doi: 10.1101/2023.11.29.569306. bioRxiv. 2023. Update in: Brief Bioinform. 2024 Mar 27;25(3):bbae122. doi: 10.1093/bib/bbae122 PMID: 38076838 Free PMC article. Updated. Preprint.
FAIR Header Reference genome: a TRUSTworthy standard.
Wright A, Wilkinson MD, Mungall C, Cain S, Richards S, Sternberg P, Provin E, Jacobs JL, Geib S, Raciti D, Yook K, Stein L, Molik DC. Wright A, et al. Among authors: jacobs jl. Brief Bioinform. 2024 Mar 27;25(3):bbae122. doi: 10.1093/bib/bbae122. Brief Bioinform. 2024. PMID: 38555475
The ATCC genome portal: 3,938 authenticated microbial reference genomes.
Nguyen SV, Puthuveetil NP, Petrone JR, Kirkland JL, Gaffney K, Tabron CL, Wax N, Duncan J, King S, Marlow R, Reese AL, Yarmosh DA, McConnell HH, Fernandes AS, Bagnoli J, Benton B, Jacobs JL. Nguyen SV, et al. Among authors: jacobs jl. Microbiol Resour Announc. 2024 Feb 15;13(2):e0104523. doi: 10.1128/mra.01045-23. Epub 2024 Jan 30. Microbiol Resour Announc. 2024. PMID: 38289057 Free PMC article.
What makes Candida auris pan-drug resistant? Integrative insights from genomic, transcriptomic, and phenomic analysis of clinical strains resistant to all four major classes of antifungal drugs.
Rhodes J, Jacobs J, Dennis EK, Manjari SR, Banavali N, Marlow R, Rokebul MA, Chaturvedi S, Chaturvedi V. Rhodes J, et al. bioRxiv [Preprint]. 2024 Jun 18:2024.06.18.599548. doi: 10.1101/2024.06.18.599548. bioRxiv. 2024. Update in: Antimicrob Agents Chemother. 2024 Oct 8;68(10):e0091124. doi: 10.1128/aac.00911-24 PMID: 38948750 Free PMC article. Updated. Preprint.
The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance.
Benton B, King S, Greenfield SR, Puthuveetil N, Reese AL, Duncan J, Marlow R, Tabron C, Pierola AE, Yarmosh DA Jr, Combs PF, Riojas MA, Bagnoli J, Jacobs JL. Benton B, et al. Among authors: jacobs jl. Microbiol Resour Announc. 2021 Nov 24;10(47):e0081821. doi: 10.1128/MRA.00818-21. Epub 2021 Nov 24. Microbiol Resour Announc. 2021. PMID: 34817215 Free PMC article.
Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies.
Yarmosh DA, Lopera JG, Puthuveetil NP, Combs PF, Reese AL, Tabron C, Pierola AE, Duncan J, Greenfield SR, Marlow R, King S, Riojas MA, Bagnoli J, Benton B, Jacobs JL. Yarmosh DA, et al. Among authors: jacobs jl. mSphere. 2022 Jun 29;7(3):e0007722. doi: 10.1128/msphere.00077-22. Epub 2022 May 2. mSphere. 2022. PMID: 35491842 Free PMC article.
HIV-1 control in vivo is related to the number but not the fraction of infected cells with viral unspliced RNA.
Capoferri AA, Wiegand A, Hong F, Jacobs JL, Spindler J, Musick A, Bale MJ, Shao W, Sobolewski MD, Cillo AR, Luke BT, Fennessey CM, Gorelick RJ, Hoh R, Halvas EK, Deeks SG, Coffin JM, Mellors JW, Kearney MF. Capoferri AA, et al. Among authors: jacobs jl. Proc Natl Acad Sci U S A. 2024 Sep 3;121(36):e2405210121. doi: 10.1073/pnas.2405210121. Epub 2024 Aug 27. Proc Natl Acad Sci U S A. 2024. PMID: 39190360
201 results