Shivashankar GV - Search Results

1

Transcriptional changes are tightly coupled to chromatin reorganization during cellular aging.

Braunger JM, Cammarata LV, Sornapudi TR, Uhler C, Shivashankar GV. Braunger JM, et al. Among authors: shivashankar gv. Aging Cell. 2024 Mar;23(3):e14056. doi: 10.1111/acel.14056. Epub 2023 Dec 7. Aging Cell. 2024. PMID: 38062919 Free PMC article.

2

Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer's disease.

Zhang X, Wang X, Shivashankar GV, Uhler C. Zhang X, et al. Among authors: shivashankar gv. Nat Commun. 2022 Dec 3;13(1):7480. doi: 10.1038/s41467-022-35233-1. Nat Commun. 2022. PMID: 36463283 Free PMC article.

3

Remodeling of cytoskeleton, chromatin, and gene expression during mechanical rejuvenation of aged human dermal fibroblasts.

Sornapudi TR, Yuan L, Braunger JM, Uhler C, Shivashankar GV. Sornapudi TR, et al. Among authors: shivashankar gv. Mol Biol Cell. 2025 Jan 1;36(1):ar6. doi: 10.1091/mbc.E24-09-0430. Epub 2024 Dec 4. Mol Biol Cell. 2025. PMID: 39630645

4

Detecting radio- and chemoresistant cells in 3D cancer co-cultures using chromatin biomarkers.

Pekeč T, Venkatachalapathy S, Shim AR, Paysan D, Grzmil M, Schibli R, Béhé M, Shivashankar GV. Pekeč T, et al. Among authors: shivashankar gv. Sci Rep. 2023 Nov 24;13(1):20662. doi: 10.1038/s41598-023-47287-2. Sci Rep. 2023. PMID: 38001169 Free PMC article.

5

Imaging and AI based chromatin biomarkers for diagnosis and therapy evaluation from liquid biopsies.

Challa K, Paysan D, Leiser D, Sauder N, Weber DC, Shivashankar GV. Challa K, et al. Among authors: shivashankar gv. NPJ Precis Oncol. 2023 Dec 14;7(1):135. doi: 10.1038/s41698-023-00484-8. NPJ Precis Oncol. 2023. PMID: 38092866 Free PMC article.

6

How enzymatic activity is involved in chromatin organization.

Das R, Sakaue T, Shivashankar GV, Prost J, Hiraiwa T. Das R, et al. Among authors: shivashankar gv. Elife. 2022 Dec 6;11:e79901. doi: 10.7554/eLife.79901. Elife. 2022. PMID: 36472500 Free PMC article.

7

Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics.

Das R, Sakaue T, Shivashankar GV, Prost J, Hiraiwa T. Das R, et al. Among authors: shivashankar gv. Phys Rev Lett. 2024 Feb 2;132(5):058401. doi: 10.1103/PhysRevLett.132.058401. Phys Rev Lett. 2024. PMID: 38364140

8

Mechanical forces and the 3D genome.

Shivashankar GV. Shivashankar GV. Curr Opin Struct Biol. 2023 Dec;83:102728. doi: 10.1016/j.sbi.2023.102728. Epub 2023 Nov 9. Curr Opin Struct Biol. 2023. PMID: 37948897 Review.

9

Deleterious Mechanical Deformation Selects Mechanoresilient Cancer Cells with Enhanced Proliferation and Chemoresistance.

Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, Zhang P, Liang L, Low BC, Shivashankar GV, Lim CT. Jiang K, et al. Among authors: shivashankar gv. Adv Sci (Weinh). 2023 Aug;10(22):e2201663. doi: 10.1002/advs.202201663. Epub 2023 May 23. Adv Sci (Weinh). 2023. PMID: 37218524 Free PMC article.

10

Correlative light and soft X-ray tomography of in situ mesoscale heterochromatin structure in intact cells.

Gupta R, Goswami Y, Yuan L, Roy B, Pereiro E, Shivashankar GV. Gupta R, et al. Among authors: shivashankar gv. Sci Rep. 2024 Nov 12;14(1):27706. doi: 10.1038/s41598-024-77361-2. Sci Rep. 2024. PMID: 39532928 Free PMC article.

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