von Hippel PH - Search Results

1

Studies of DNA 'Breathing' by Polarization-Sweep Single-Molecule Fluorescence Microscopy of Exciton-Coupled (iCy3)₂ Dimer-Labeled DNA Fork Constructs.

Maurer J, Albrecht CS, Herbert P, Heussman D, Chang A, von Hippel PH, Marcus AH. Maurer J, et al. Among authors: von hippel ph. J Phys Chem B. 2023 Dec 21;127(50):10730-10748. doi: 10.1021/acs.jpcb.3c06463. Epub 2023 Dec 7. J Phys Chem B. 2023. PMID: 38060691 Free PMC article.

2

Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy.

Marcus AH, Heussman D, Maurer J, Albrecht CS, Herbert P, von Hippel PH. Marcus AH, et al. Among authors: von hippel ph. Annu Rev Phys Chem. 2023 Apr 24;74:245-265. doi: 10.1146/annurev-physchem-090419-041204. Epub 2023 Jan 25. Annu Rev Phys Chem. 2023. PMID: 36696590 Free PMC article. Review.

3

Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites.

Heussman D, Enkhbaatar L, Sorour MI, Kistler KA, von Hippel PH, Matsika S, Marcus AH. Heussman D, et al. Among authors: von hippel ph. Nucleic Acids Res. 2024 Feb 9;52(3):1272-1289. doi: 10.1093/nar/gkad1163. Nucleic Acids Res. 2024. PMID: 38050987 Free PMC article.

4

Spectroscopic approaches for studies of site-specific DNA base and backbone 'breathing' using exciton-coupled dimer-labeled DNA.

Marcus AH, Matsika S, Heussman D, Sorour MI, Maurer J, Albrecht CS, Enkhbaatar L, Herbert P, Kistler KA, von Hippel PH. Marcus AH, et al. Among authors: von hippel ph. ArXiv [Preprint]. 2024 Mar 27:arXiv:2403.16251v2. ArXiv. 2024. PMID: 38584614 Free PMC article. Preprint.

5

Studies of DNA breathing in exciton-coupled (iCy3)₂ dimer-labeled DNA constructs by polarization-sweep single-molecule fluorescence (PS-SMF) microscopy.

Maurer J, Albrecht CS, Herbert P, Heussman D, Chang A, von Hippel PH, Marcus AH. Maurer J, et al. Among authors: von hippel ph. Proc SPIE Int Soc Opt Eng. 2024 Jan-Feb;12863:128630C. doi: 10.1117/12.3001962. Epub 2024 Mar 13. Proc SPIE Int Soc Opt Eng. 2024. PMID: 39149417 Free PMC article.

6

Two-photon excitation two-dimensional fluorescence spectroscopy (2PE-2DFS) of the fluorescent nucleobase 6-MI.

Albrecht CS, Scatena LF, von Hippel PH, Marcus AH. Albrecht CS, et al. Among authors: von hippel ph. Proc SPIE Int Soc Opt Eng. 2024 Jan-Feb;12863:1286305. doi: 10.1117/12.3001802. Epub 2024 Mar 13. Proc SPIE Int Soc Opt Eng. 2024. PMID: 39149416 Free PMC article.

7

Temperature-dependent local conformations and conformational distributions of cyanine dimer labeled single-stranded-double-stranded DNA junctions by 2D fluorescence spectroscopy.

Heussman D, Kittell J, von Hippel PH, Marcus AH. Heussman D, et al. Among authors: von hippel ph. J Chem Phys. 2022 Jan 28;156(4):045101. doi: 10.1063/5.0076261. J Chem Phys. 2022. PMID: 35105081 Free PMC article.

8

Submillisecond Conformational Transitions of Short Single-Stranded DNA Lattices by Photon Correlation Single-Molecule Förster Resonance Energy Transfer.

Israels B, Albrecht CS, Dang A, Barney M, von Hippel PH, Marcus AH. Israels B, et al. Among authors: von hippel ph. J Phys Chem B. 2021 Aug 26;125(33):9426-9440. doi: 10.1021/acs.jpcb.1c04119. Epub 2021 Aug 11. J Phys Chem B. 2021. PMID: 34379430 Free PMC article.

9

Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms.

Beyerle ER, Dinpajooh M, Ji H, von Hippel PH, Marcus AH, Guenza MG. Beyerle ER, et al. Among authors: von hippel ph. Nucleic Acids Res. 2021 Feb 26;49(4):1872-1885. doi: 10.1093/nar/gkab015. Nucleic Acids Res. 2021. PMID: 33503257 Free PMC article.

10

Mapping DNA conformations and interactions within the binding cleft of bacteriophage T4 single-stranded DNA binding protein (gp32) at single nucleotide resolution.

Camel BR, Jose D, Meze K, Dang A, von Hippel PH. Camel BR, et al. Among authors: von hippel ph. Nucleic Acids Res. 2021 Jan 25;49(2):916-927. doi: 10.1093/nar/gkaa1230. Nucleic Acids Res. 2021. PMID: 33367802 Free PMC article.

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