Seemann SE - Search Results

1

Progress and harmonization of gene editing to treat human diseases: Proceeding of COST Action CA21113 GenE-HumDi.

Cavazza A, Hendel A, Bak RO, Rio P, Güell M, Lainšček D, Arechavala-Gomeza V, Peng L, Hapil FZ, Harvey J, Ortega FG, Gonzalez-Martinez C, Lederer CW, Mikkelsen K, Gasiunas G, Kalter N, Gonçalves MAFV, Petersen J, Garanto A, Montoliu L, Maresca M, Seemann SE, Gorodkin J, Mazini L, Sanchez R, Rodriguez-Madoz JR, Maldonado-Pérez N, Laura T, Schmueck-Henneresse M, Maccalli C, Grünewald J, Carmona G, Kachamakova-Trojanowska N, Miccio A, Martin F, Turchiano G, Cathomen T, Luo Y, Tsai SQ, Benabdellah K; COST Action CA21113. Cavazza A, et al. Among authors: seemann se. Mol Ther Nucleic Acids. 2023 Oct 29;34:102066. doi: 10.1016/j.omtn.2023.102066. eCollection 2023 Dec 12. Mol Ther Nucleic Acids. 2023. PMID: 38034032 Free PMC article. Review.

2

Detection of RNA structures in porcine EST data and related mammals.

Seemann SE, Gilchrist MJ, Hofacker IL, Stadler PF, Gorodkin J. Seemann SE, et al. BMC Genomics. 2007 Sep 10;8:316. doi: 10.1186/1471-2164-8-316. BMC Genomics. 2007. PMID: 17845718 Free PMC article.

3

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments.

Seemann SE, Gorodkin J, Backofen R. Seemann SE, et al. Nucleic Acids Res. 2008 Nov;36(20):6355-62. doi: 10.1093/nar/gkn544. Epub 2008 Oct 4. Nucleic Acids Res. 2008. PMID: 18836192 Free PMC article.

4

Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions.

Seemann SE, Richter AS, Gorodkin J, Backofen R. Seemann SE, et al. Algorithms Mol Biol. 2010 May 21;5:22. doi: 10.1186/1748-7188-5-22. Algorithms Mol Biol. 2010. PMID: 20492641 Free PMC article.

5

PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.

Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J. Seemann SE, et al. Bioinformatics. 2011 Jan 15;27(2):211-9. doi: 10.1093/bioinformatics/btq634. Epub 2010 Nov 18. Bioinformatics. 2011. PMID: 21088024 Free PMC article.

6

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.

Seemann SE, Menzel P, Backofen R, Gorodkin J. Seemann SE, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W107-11. doi: 10.1093/nar/gkr248. Epub 2011 May 23. Nucleic Acids Res. 2011. PMID: 21609960 Free PMC article.

7

Sequence and expression analysis of gaps in human chromosome 20.

Minocherhomji S, Seemann S, Mang Y, El-Schich Z, Bak M, Hansen C, Papadopoulos N, Josefsen K, Nielsen H, Gorodkin J, Tommerup N, Silahtaroglu A. Minocherhomji S, et al. Nucleic Acids Res. 2012 Aug;40(14):6660-72. doi: 10.1093/nar/gks302. Epub 2012 Apr 17. Nucleic Acids Res. 2012. PMID: 22510267 Free PMC article.

8

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain.

Seemann SE, Sunkin SM, Hawrylycz MJ, Ruzzo WL, Gorodkin J. Seemann SE, et al. BMC Genomics. 2012 May 31;13:214. doi: 10.1186/1471-2164-13-214. BMC Genomics. 2012. PMID: 22651826 Free PMC article.

9

RILogo: visualizing RNA-RNA interactions.

Menzel P, Seemann SE, Gorodkin J. Menzel P, et al. Among authors: seemann se. Bioinformatics. 2012 Oct 1;28(19):2523-6. doi: 10.1093/bioinformatics/bts461. Epub 2012 Jul 23. Bioinformatics. 2012. PMID: 22826541

10

RNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs.

Sabarinathan R, Tafer H, Seemann SE, Hofacker IL, Stadler PF, Gorodkin J. Sabarinathan R, et al. Among authors: seemann se. Hum Mutat. 2013 Apr;34(4):546-56. doi: 10.1002/humu.22273. Hum Mutat. 2013. PMID: 23315997 Free PMC article.

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