O'Malley R - Search Results

1

Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination.

Hyden B, Carper DL, Abraham PE, Yuan G, Yao T, Baumgart L, Zhang Y, Chen C, O'Malley R, Chen JG, Yang X, Hettich RL, Tuskan GA, Smart LB. Hyden B, et al. Plant Direct. 2023 Nov 15;7(11):e3546. doi: 10.1002/pld3.546. eCollection 2023 Nov. Plant Direct. 2023. PMID: 38028649 Free PMC article.

2

Persistence and plasticity in bacterial gene regulation.

Baumgart LA, Lee JE, Salamov A, Dilworth DJ, Na H, Mingay M, Blow MJ, Zhang Y, Yoshinaga Y, Daum CG, O'Malley RC. Baumgart LA, et al. Nat Methods. 2021 Dec;18(12):1499-1505. doi: 10.1038/s41592-021-01312-2. Epub 2021 Nov 25. Nat Methods. 2021. PMID: 34824476 Free article.

3

An optimized ChIP-Seq framework for profiling histone modifications in Chromochloris zofingiensis.

Strenkert D, Mingay M, Schmollinger S, Chen C, O'Malley RC, Merchant SS. Strenkert D, et al. Plant Direct. 2022 Mar 28;6(3):e392. doi: 10.1002/pld3.392. eCollection 2022 Mar. Plant Direct. 2022. PMID: 35382117 Free PMC article.

4

Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii.

Weng X, Song H, Sreedasyam A, Haque T, Zhang L, Chen C, Yoshinaga Y, Williams M, O'Malley RC, Grimwood J, Schmutz J, Juenger TE. Weng X, et al. Plant Physiol. 2023 Jul 3;192(3):2374-2393. doi: 10.1093/plphys/kiad209. Plant Physiol. 2023. PMID: 37018475 Free PMC article.

5

Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.

Sun G, Wase N, Shu S, Jenkins J, Zhou B, Torres-Rodríguez JV, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Pedersen C, Gottilla T, Foltz A, Yu H, O'Malley R, Zhang C, Devos KM, Sigmon B, Yu B, Obata T, Schmutz J, Schnable JC. Sun G, et al. Nat Commun. 2022 Dec 13;13(1):7731. doi: 10.1038/s41467-022-35507-8. Nat Commun. 2022. PMID: 36513676 Free PMC article.

6

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types.

Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE. Shulse CN, et al. Cell Rep. 2019 May 14;27(7):2241-2247.e4. doi: 10.1016/j.celrep.2019.04.054. Cell Rep. 2019. PMID: 31091459 Free PMC article.

7

The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus.

Wu VW, Thieme N, Huberman LB, Dietschmann A, Kowbel DJ, Lee J, Calhoun S, Singan VR, Lipzen A, Xiong Y, Monti R, Blow MJ, O'Malley RC, Grigoriev IV, Benz JP, Glass NL. Wu VW, et al. Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6003-6013. doi: 10.1073/pnas.1915611117. Epub 2020 Feb 28. Proc Natl Acad Sci U S A. 2020. PMID: 32111691 Free PMC article.

8

DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus.

Huberman LB, Wu VW, Kowbel DJ, Lee J, Daum C, Grigoriev IV, O'Malley RC, Glass NL. Huberman LB, et al. Proc Natl Acad Sci U S A. 2021 Mar 30;118(13):e2009501118. doi: 10.1073/pnas.2009501118. Proc Natl Acad Sci U S A. 2021. PMID: 33753477 Free PMC article.

9

Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing.

Huberman LB, Wu VW, Lee J, Daum C, O'Malley RC, Glass NL. Huberman LB, et al. mSphere. 2021 Oct 27;6(5):e0056421. doi: 10.1128/mSphere.00564-21. Epub 2021 Sep 15. mSphere. 2021. PMID: 34523983 Free PMC article.

10

The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle.

Strenkert D, Yildirim A, Yan J, Yoshinaga Y, Pellegrini M, O'Malley RC, Merchant SS, Umen JG. Strenkert D, et al. Plant J. 2022 Oct;112(2):352-368. doi: 10.1111/tpj.15948. Epub 2022 Sep 20. Plant J. 2022. PMID: 35986497 Free PMC article.

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