Donald BR - Search Results

1

Protocol for Designing De Novo Noncanonical Peptide Binders in OSPREY.

Childs H, Guerin N, Zhou P, Donald BR. Childs H, et al. Among authors: donald br. J Comput Biol. 2024 Oct;31(10):965-974. doi: 10.1089/cmb.2024.0669. Epub 2024 Oct 4. J Comput Biol. 2024. PMID: 39364612

2

DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors.

Guerin N, Childs H, Zhou P, Donald BR. Guerin N, et al. Among authors: donald br. Protein Eng Des Sel. 2024 Jan 29;37:gzae007. doi: 10.1093/protein/gzae007. Protein Eng Des Sel. 2024. PMID: 38757573

3

DexDesign: A new OSPREY-based algorithm for designing de novo D-peptide inhibitors.

Guerin N, Childs H, Zhou P, Donald BR. Guerin N, et al. Among authors: donald br. bioRxiv [Preprint]. 2024 Feb 14:2024.02.12.579944. doi: 10.1101/2024.02.12.579944. bioRxiv. 2024. Update in: Protein Eng Des Sel. 2024 Jan 29;37:gzae007. doi: 10.1093/protein/gzae007 PMID: 38405797 Free PMC article. Updated. Preprint.

4

Predicting Affinity Through Homology (PATH): Interpretable Binding Affinity Prediction with Persistent Homology.

Long Y, Donald BR. Long Y, et al. Among authors: donald br. bioRxiv [Preprint]. 2024 Oct 21:2023.11.16.567384. doi: 10.1101/2023.11.16.567384. bioRxiv. 2024. PMID: 38014181 Free PMC article. Preprint.

5

Disruptor: Computational identification of oncogenic mutants disrupting protein-protein and protein-DNA interactions.

Kugler V, Lieb A, Guerin N, Donald BR, Stefan E, Kaserer T. Kugler V, et al. Among authors: donald br. Commun Biol. 2023 Jul 13;6(1):720. doi: 10.1038/s42003-023-05089-2. Commun Biol. 2023. PMID: 37443295 Free PMC article.

6

Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.

Holt GT, Gorman J, Wang S, Lowegard AU, Zhang B, Liu T, Lin BC, Louder MK, Frenkel MS, McKee K, O'Dell S, Rawi R, Shen CH, Doria-Rose NA, Kwong PD, Donald BR. Holt GT, et al. Among authors: donald br. Cell Rep. 2023 Jul 25;42(7):112711. doi: 10.1016/j.celrep.2023.112711. Epub 2023 Jul 11. Cell Rep. 2023. PMID: 37436900 Free PMC article.

7

Discovery, characterization, and redesign of potent antimicrobial thanatin orthologs from Chinavia ubica and Murgantia histrionica targeting E. coli LptA.

Huynh K, Kibrom A, Donald BR, Zhou P. Huynh K, et al. Among authors: donald br. J Struct Biol X. 2023 Jun 13;8:100091. doi: 10.1016/j.yjsbx.2023.100091. eCollection 2023 Dec. J Struct Biol X. 2023. PMID: 37416832 Free PMC article.

8

Protocol for predicting drug-resistant protein mutations to an ERK2 inhibitor using RESISTOR.

Guerin N, Kaserer T, Donald BR. Guerin N, et al. Among authors: donald br. STAR Protoc. 2023 Apr 27;4(2):102170. doi: 10.1016/j.xpro.2023.102170. Online ahead of print. STAR Protoc. 2023. PMID: 37115667 Free PMC article.

9

Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures.

Guerin N, Feichtner A, Stefan E, Kaserer T, Donald BR. Guerin N, et al. Among authors: donald br. Cell Syst. 2022 Oct 19;13(10):830-843.e3. doi: 10.1016/j.cels.2022.09.003. Cell Syst. 2022. PMID: 36265469 Free PMC article.

10

RESISTOR: A New OSPREY Module to Predict Resistance Mutations.

Guerin N, Kaserer T, Donald BR. Guerin N, et al. Among authors: donald br. J Comput Biol. 2022 Dec;29(12):1346-1352. doi: 10.1089/cmb.2022.0254. Epub 2022 Sep 13. J Comput Biol. 2022. PMID: 36099194 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

91 results

Search Page

Filters