Loher P - Search Results

1

The Typical tRNA Co-Expresses Multiple 5' tRNA Halves Whose Sequences and Abundances Depend on Isodecoder and Isoacceptor and Change with Tissue Type, Cell Type, and Disease.

Akins RB, Ostberg K, Cherlin T, Tsiouplis NJ, Loher P, Rigoutsos I. Akins RB, et al. Among authors: loher p. Noncoding RNA. 2023 Nov 6;9(6):69. doi: 10.3390/ncrna9060069. Noncoding RNA. 2023. PMID: 37987365 Free PMC article.

2

MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data.

Loher P, Telonis AG, Rigoutsos I. Loher P, et al. Sci Rep. 2017 Feb 21;7:41184. doi: 10.1038/srep41184. Sci Rep. 2017. PMID: 28220888 Free PMC article.

3

Accurate Profiling and Quantification of tRNA Fragments from RNA-Seq Data: A Vade Mecum for MINTmap.

Loher P, Telonis AG, Rigoutsos I. Loher P, et al. Methods Mol Biol. 2018;1680:237-255. doi: 10.1007/978-1-4939-7339-2_16. Methods Mol Biol. 2018. PMID: 29030853

4

Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme.

Pawar K, Shigematsu M, Loher P, Honda S, Rigoutsos I, Kirino Y. Pawar K, et al. Among authors: loher p. RNA Biol. 2019 Dec;16(12):1817-1825. doi: 10.1080/15476286.2019.1664885. Epub 2019 Sep 12. RNA Biol. 2019. PMID: 31512554 Free PMC article.

5

Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner.

Cherlin T, Magee R, Jing Y, Pliatsika V, Loher P, Rigoutsos I. Cherlin T, et al. Among authors: loher p. BMC Biol. 2020 Apr 13;18(1):38. doi: 10.1186/s12915-020-0763-0. BMC Biol. 2020. PMID: 32279660 Free PMC article.

6

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.

Honda S, Loher P, Shigematsu M, Palazzo JP, Suzuki R, Imoto I, Rigoutsos I, Kirino Y. Honda S, et al. Among authors: loher p. Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3816-25. doi: 10.1073/pnas.1510077112. Epub 2015 Jun 29. Proc Natl Acad Sci U S A. 2015. PMID: 26124144 Free PMC article.

7

Interactive exploration of RNA22 microRNA target predictions.

Loher P, Rigoutsos I. Loher P, et al. Bioinformatics. 2012 Dec 15;28(24):3322-3. doi: 10.1093/bioinformatics/bts615. Epub 2012 Oct 16. Bioinformatics. 2012. PMID: 23074262

8

IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies.

Loher P, Londin ER, Rigoutsos I. Loher P, et al. Oncotarget. 2014 Sep 30;5(18):8790-802. doi: 10.18632/oncotarget.2405. Oncotarget. 2014. PMID: 25229428 Free PMC article.

9

Nuclear and mitochondrial tRNA-lookalikes in the human genome.

Telonis AG, Loher P, Kirino Y, Rigoutsos I. Telonis AG, et al. Among authors: loher p. Front Genet. 2014 Oct 8;5:344. doi: 10.3389/fgene.2014.00344. eCollection 2014. Front Genet. 2014. PMID: 25339973 Free PMC article.

10

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies.

Telonis AG, Loher P, Honda S, Jing Y, Palazzo J, Kirino Y, Rigoutsos I. Telonis AG, et al. Among authors: loher p. Oncotarget. 2015 Sep 22;6(28):24797-822. doi: 10.18632/oncotarget.4695. Oncotarget. 2015. PMID: 26325506 Free PMC article.

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