Sun F - Search Results

1

Identifying local associations in biological time series: algorithms, statistical significance, and applications.

Ai D, Chen L, Xie J, Cheng L, Zhang F, Luan Y, Li Y, Hou S, Sun F, Xia LC. Ai D, et al. Among authors: sun f. Brief Bioinform. 2023 Sep 22;24(6):bbad390. doi: 10.1093/bib/bbad390. Brief Bioinform. 2023. PMID: 37930023 Review.

2

Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach.

Wang W, Nunez-Iglesias J, Luan Y, Sun F. Wang W, et al. Among authors: sun f. BMC Bioinformatics. 2009 Sep 3;10:277. doi: 10.1186/1471-2105-10-277. BMC Bioinformatics. 2009. PMID: 19728875 Free PMC article.

3

The power of detecting enriched patterns: an HMM approach.

Zhai Z, Ku SY, Luan Y, Reinert G, Waterman MS, Sun F. Zhai Z, et al. Among authors: sun f. J Comput Biol. 2010 Apr;17(4):581-92. doi: 10.1089/cmb.2009.0218. J Comput Biol. 2010. PMID: 20426691 Free PMC article.

4

Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny.

Chang Q, Luan Y, Sun F. Chang Q, et al. Among authors: sun f. BMC Bioinformatics. 2011 Apr 25;12:118. doi: 10.1186/1471-2105-12-118. BMC Bioinformatics. 2011. PMID: 21518444 Free PMC article.

5

Accurate genome relative abundance estimation based on shotgun metagenomic reads.

Xia LC, Cram JA, Chen T, Fuhrman JA, Sun F. Xia LC, et al. Among authors: sun f. PLoS One. 2011;6(12):e27992. doi: 10.1371/journal.pone.0027992. Epub 2011 Dec 6. PLoS One. 2011. PMID: 22162995 Free PMC article.

6

Computational methods for the analysis of tag sequences in metagenomics studies.

Chang Q, Luan Y, Chen T, Fuhrman JA, Sun F. Chang Q, et al. Among authors: sun f. Front Biosci (Schol Ed). 2012 Jun 1;4(4):1333-43. doi: 10.2741/s335. Front Biosci (Schol Ed). 2012. PMID: 22652875 Free article. Review.

7

Normal and compound poisson approximations for pattern occurrences in NGS reads.

Zhai Z, Reinert G, Song K, Waterman MS, Luan Y, Sun F. Zhai Z, et al. Among authors: sun f. J Comput Biol. 2012 Jun;19(6):839-54. doi: 10.1089/cmb.2012.0029. J Comput Biol. 2012. PMID: 22697250 Free PMC article.

8

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.

Xia LC, Steele JA, Cram JA, Cardon ZG, Simmons SL, Vallino JJ, Fuhrman JA, Sun F. Xia LC, et al. Among authors: sun f. BMC Syst Biol. 2011;5 Suppl 2(Suppl 2):S15. doi: 10.1186/1752-0509-5-S2-S15. Epub 2011 Dec 14. BMC Syst Biol. 2011. PMID: 22784572 Free PMC article.

9

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.

Xia LC, Ai D, Cram J, Fuhrman JA, Sun F. Xia LC, et al. Among authors: sun f. Bioinformatics. 2013 Jan 15;29(2):230-7. doi: 10.1093/bioinformatics/bts668. Epub 2012 Nov 23. Bioinformatics. 2013. PMID: 23178636 Free PMC article.

10

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.

Song K, Ren J, Reinert G, Deng M, Waterman MS, Sun F. Song K, et al. Among authors: sun f. Brief Bioinform. 2014 May;15(3):343-53. doi: 10.1093/bib/bbt067. Epub 2013 Sep 23. Brief Bioinform. 2014. PMID: 24064230 Free PMC article. Review.

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