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Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.
Brunner FS, Payne A, Cairns E, Airey G, Gregory R, Pickwell ND, Wilson M, Carlile M, Holmes N, Hill V, Child H, Tomlinson J, Ahmed S, Denise H, Rowe W, Frazer J, Aerle RV, Evens N, Porter J; COVID-19 Genomics UK (COG-UK) Consortium; Templeton K, Jeffries AR, Loose M, Paterson S. Brunner FS, et al. Among authors: payne a. Water Res. 2023 Dec 1;247:120804. doi: 10.1016/j.watres.2023.120804. Epub 2023 Oct 29. Water Res. 2023. PMID: 37925861 Free article.
minoTour, real-time monitoring and analysis for nanopore sequencers.
Munro R, Santos R, Payne A, Forey T, Osei S, Holmes N, Loose M. Munro R, et al. Among authors: payne a. Bioinformatics. 2022 Jan 27;38(4):1133-1135. doi: 10.1093/bioinformatics/btab780. Bioinformatics. 2022. PMID: 34791062 Free PMC article.
Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.
Bassano I, Ramachandran VK, Khalifa MS, Lilley CJ, Brown MR, van Aerle R, Denise H, Rowe W, George A, Cairns E, Wierzbicki C, Pickwell ND, Carlile M, Holmes N, Payne A, Loose M, Burke TA, Paterson S, Wade MJ, Grimsley JMS. Bassano I, et al. Among authors: payne a. Microb Genom. 2023 Apr;9(4):mgen000933. doi: 10.1099/mgen.0.000933. Microb Genom. 2023. PMID: 37074153 Free PMC article.
NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.
Simpson LA, Crowley D, Forey T, Acosta H, Ferjentsik Z, Chatfield J, Payne A, Simpson BS, Redwood C, Dixon JE, Holmes N, Sang F, Alberio R, Loose M, Johnson AD. Simpson LA, et al. Among authors: payne a. PLoS Biol. 2023 Jun 14;21(6):e3002121. doi: 10.1371/journal.pbio.3002121. eCollection 2023 Jun. PLoS Biol. 2023. PMID: 37315073 Free PMC article.
Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: payne a. Nat Methods. 2020 Jan;17(1):114. doi: 10.1038/s41592-019-0697-z. Nat Methods. 2020. PMID: 31819268 Free PMC article.
Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: payne a. Nat Methods. 2019 Dec;16(12):1297-1305. doi: 10.1038/s41592-019-0617-2. Epub 2019 Nov 18. Nat Methods. 2019. PMID: 31740818 Free PMC article.
Rapid-CNS2: rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof-of-concept study.
Patel A, Dogan H, Payne A, Krause E, Sievers P, Schoebe N, Schrimpf D, Blume C, Stichel D, Holmes N, Euskirchen P, Hench J, Frank S, Rosenstiel-Goidts V, Ratliff M, Etminan N, Unterberg A, Dieterich C, Herold-Mende C, Pfister SM, Wick W, Loose M, von Deimling A, Sill M, Jones DTW, Schlesner M, Sahm F. Patel A, et al. Among authors: payne a. Acta Neuropathol. 2022 May;143(5):609-612. doi: 10.1007/s00401-022-02415-6. Epub 2022 Mar 31. Acta Neuropathol. 2022. PMID: 35357562 Free PMC article. No abstract available.
1,346 results