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Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.
Brunner FS, Payne A, Cairns E, Airey G, Gregory R, Pickwell ND, Wilson M, Carlile M, Holmes N, Hill V, Child H, Tomlinson J, Ahmed S, Denise H, Rowe W, Frazer J, Aerle RV, Evens N, Porter J; COVID-19 Genomics UK (COG-UK) Consortium; Templeton K, Jeffries AR, Loose M, Paterson S. Brunner FS, et al. Among authors: denise h. Water Res. 2023 Dec 1;247:120804. doi: 10.1016/j.watres.2023.120804. Epub 2023 Oct 29. Water Res. 2023. PMID: 37925861 Free article.
A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater.
Kevill JL, Pellett C, Farkas K, Brown MR, Bassano I, Denise H, McDonald JE, Malham SK, Porter J, Warren J, Evens NP, Paterson S, Singer AC, Jones DL. Kevill JL, et al. Among authors: denise h. Sci Total Environ. 2022 Feb 20;808:151916. doi: 10.1016/j.scitotenv.2021.151916. Epub 2021 Nov 24. Sci Total Environ. 2022. PMID: 34826466 Free PMC article.
City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants.
Brunner FS, Brown MR, Bassano I, Denise H, Khalifa MS, Wade MJ, van Aerle R, Kevill JL, Jones DL, Farkas K, Jeffries AR; COVID-19 Genomics UK (COG-UK) Consortium; Cairns E, Wierzbicki C, Paterson S. Brunner FS, et al. Among authors: denise h. Water Res. 2022 Nov 1;226:119306. doi: 10.1016/j.watres.2022.119306. Epub 2022 Oct 28. Water Res. 2022. PMID: 36369689 Free PMC article.
Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.
Bassano I, Ramachandran VK, Khalifa MS, Lilley CJ, Brown MR, van Aerle R, Denise H, Rowe W, George A, Cairns E, Wierzbicki C, Pickwell ND, Carlile M, Holmes N, Payne A, Loose M, Burke TA, Paterson S, Wade MJ, Grimsley JMS. Bassano I, et al. Among authors: denise h. Microb Genom. 2023 Apr;9(4):mgen000933. doi: 10.1099/mgen.0.000933. Microb Genom. 2023. PMID: 37074153 Free PMC article.
Rapid Assessment of SARS-CoV-2 Variant-Associated Mutations in Wastewater Using Real-Time RT-PCR.
Farkas K, Pellett C, Williams R, Alex-Sanders N, Bassano I, Brown MR, Denise H, Grimsley JMS, Kevill JL, Khalifa MS, Pântea I, Story R, Wade MJ, Woodhall N, Jones DL. Farkas K, et al. Among authors: denise h. Microbiol Spectr. 2023 Feb 14;11(1):e0317722. doi: 10.1128/spectrum.03177-22. Epub 2023 Jan 11. Microbiol Spectr. 2023. PMID: 36629447 Free PMC article.
SWAMPy: simulating SARS-CoV-2 wastewater amplicon metagenomes.
Boulton W, Fidan FR, Denise H, De Maio N, Goldman N. Boulton W, et al. Among authors: denise h. Bioinformatics. 2024 Sep 2;40(9):btae532. doi: 10.1093/bioinformatics/btae532. Bioinformatics. 2024. PMID: 39226177 Free PMC article.
Wastewater monitoring for detection of public health markers during the COVID-19 pandemic: Near-source monitoring of schools in England over an academic year.
Hassard F, Vu M, Rahimzadeh S, Castro-Gutierrez V, Stanton I, Burczynska B, Wildeboer D, Baio G, Brown MR, Garelick H, Hofman J, Kasprzyk-Hordern B, Majeed A, Priest S, Denise H, Khalifa M, Bassano I, Wade MJ, Grimsley J, Lundy L, Singer AC, Di Cesare M. Hassard F, et al. Among authors: denise h. PLoS One. 2023 May 30;18(5):e0286259. doi: 10.1371/journal.pone.0286259. eCollection 2023. PLoS One. 2023. PMID: 37252922 Free PMC article.
Bacterial Adaptation to Venom in Snakes and Arachnida.
Esmaeilishirazifard E, Usher L, Trim C, Denise H, Sangal V, Tyson GH, Barlow A, Redway KF, Taylor JD, Kremyda-Vlachou M, Davies S, Loftus TD, Lock MMG, Wright K, Dalby A, Snyder LAS, Wuster W, Trim S, Moschos SA. Esmaeilishirazifard E, et al. Among authors: denise h. Microbiol Spectr. 2022 Jun 29;10(3):e0240821. doi: 10.1128/spectrum.02408-21. Epub 2022 May 23. Microbiol Spectr. 2022. PMID: 35604233 Free PMC article.
37 results