Ferrie JJ - Search Results

1

Correction: Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA).

Graham TGW, Ferrie JJ, Dailey GM, Tjian R, Darzacq X. Graham TGW, et al. Among authors: ferrie jj. Elife. 2024 Feb 20;13:e97099. doi: 10.7554/eLife.97099. Elife. 2024. PMID: 38375862 Free PMC article.

2

p300 is an obligate integrator of combinatorial transcription factor inputs.

Ferrie JJ, Karr JP, Graham TGW, Dailey GM, Zhang G, Tjian R, Darzacq X. Ferrie JJ, et al. Mol Cell. 2024 Jan 18;84(2):234-243.e4. doi: 10.1016/j.molcel.2023.12.004. Epub 2023 Dec 29. Mol Cell. 2024. PMID: 38159566 Free article.

3

A novel pathogenic mutation of MeCP2 impairs chromatin association independent of protein levels.

Zhou J, Cattoglio C, Shao Y, Tirumala HP, Vetralla C, Bajikar SS, Li Y, Chen H, Wang Q, Wu Z, Tang B, Zahabiyon M, Bajic A, Meng X, Ferrie JJ, LaGrone A, Zhang P, Kim JJ, Tang J, Liu Z, Darzacq X, Heintz N, Tjian R, Zoghbi HY. Zhou J, et al. Among authors: ferrie jj. Genes Dev. 2023 Oct 1;37(19-20):883-900. doi: 10.1101/gad.350733.123. Epub 2023 Oct 27. Genes Dev. 2023. PMID: 37890975 Free PMC article.

4

p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs.

Ferrie JJ, Karr JP, Graham TGW, Dailey GM, Zhang G, Tjian R, Darzacq X. Ferrie JJ, et al. bioRxiv [Preprint]. 2023 May 18:2023.05.18.541220. doi: 10.1101/2023.05.18.541220. bioRxiv. 2023. Update in: Mol Cell. 2024 Jan 18;84(2):234-243.e4. doi: 10.1016/j.molcel.2023.12.004 PMID: 37292840 Free PMC article. Updated. Preprint.

5

Identification of a Putative α-synuclein Radioligand Using an in silico Similarity Search.

Janssen B, Tian G, Lengyel-Zhand Z, Hsieh CJ, Lougee MG, Riad A, Xu K, Hou C, Weng CC, Lopresti BJ, Kim HJ, Pagar VV, Ferrie JJ, Garcia BA, Mathis CA, Luk K, Petersson EJ, Mach RH. Janssen B, et al. Among authors: ferrie jj. Mol Imaging Biol. 2023 Aug;25(4):704-719. doi: 10.1007/s11307-023-01814-9. Epub 2023 Mar 29. Mol Imaging Biol. 2023. PMID: 36991273 Free PMC article.

6

"Structure"-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation.

Ferrie JJ, Karr JP, Tjian R, Darzacq X. Ferrie JJ, et al. Mol Cell. 2022 Nov 3;82(21):3970-3984. doi: 10.1016/j.molcel.2022.09.021. Epub 2022 Oct 19. Mol Cell. 2022. PMID: 36265487 Free article. Review.

7

Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA).

Graham TGW, Ferrie JJ, Dailey GM, Tjian R, Darzacq X. Graham TGW, et al. Among authors: ferrie jj. Elife. 2022 Aug 17;11:e76870. doi: 10.7554/eLife.76870. Elife. 2022. PMID: 35976226 Free PMC article.

8

The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer-promoter communication.

Karr JP, Ferrie JJ, Tjian R, Darzacq X. Karr JP, et al. Among authors: ferrie jj. Genes Dev. 2022 Jan 1;36(1-2):7-16. doi: 10.1101/gad.349160.121. Epub 2021 Dec 30. Genes Dev. 2022. PMID: 34969825 Free PMC article. Review.

9

Biomolecular simulation based machine learning models accurately predict sites of tolerability to the unnatural amino acid acridonylalanine.

Giannakoulias S, Shringari SR, Ferrie JJ, Petersson EJ. Giannakoulias S, et al. Among authors: ferrie jj. Sci Rep. 2021 Sep 15;11(1):18406. doi: 10.1038/s41598-021-97965-2. Sci Rep. 2021. PMID: 34526629 Free PMC article.

10

Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening.

Ferrie JJ, Lengyel-Zhand Z, Janssen B, Lougee MG, Giannakoulias S, Hsieh CJ, Pagar VV, Weng CC, Xu H, Graham TJA, Lee VM, Mach RH, Petersson EJ. Ferrie JJ, et al. Chem Sci. 2020 Sep 10;11(47):12746-12754. doi: 10.1039/d0sc02159h. eCollection 2020 Dec 21. Chem Sci. 2020. PMID: 33889379 Free PMC article.

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