Gasser RB - Search Results

1

DeepSecE: A Deep-Learning-Based Framework for Multiclass Prediction of Secreted Proteins in Gram-Negative Bacteria.

Zhang Y, Guan J, Li C, Wang Z, Deng Z, Gasser RB, Song J, Ou HY. Zhang Y, et al. Among authors: gasser rb. Research (Wash D C). 2023 Oct 25;6:0258. doi: 10.34133/research.0258. eCollection 2023. Research (Wash D C). 2023. PMID: 37886621 Free PMC article.

2

PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships.

Pan T, Li C, Bi Y, Wang Z, Gasser RB, Purcell AW, Akutsu T, Webb GI, Imoto S, Song J. Pan T, et al. Among authors: gasser rb. Bioinformatics. 2023 Mar 1;39(3):btad094. doi: 10.1093/bioinformatics/btad094. Bioinformatics. 2023. PMID: 36794913 Free PMC article.

3

TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level.

Liu Y, Wei G, Li C, Shen LC, Gasser RB, Song J, Chen D, Yu DJ. Liu Y, et al. Among authors: gasser rb. Brief Bioinform. 2023 May 19;24(3):bbad132. doi: 10.1093/bib/bbad132. Brief Bioinform. 2023. PMID: 37080771 Free PMC article.

4

An informatic workflow for the enhanced annotation of excretory/secretory proteins of Haemonchus contortus.

Zheng Y, Young ND, Song J, Chang BCH, Gasser RB. Zheng Y, et al. Among authors: gasser rb. Comput Struct Biotechnol J. 2023 Mar 18;21:2696-2704. doi: 10.1016/j.csbj.2023.03.025. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37143762 Free PMC article.

5

Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins.

Li F, Guo X, Bi Y, Jia R, Pitt ME, Pan S, Li S, Gasser RB, Coin LJ, Song J. Li F, et al. Among authors: gasser rb. Comput Biol Med. 2023 Sep;163:107155. doi: 10.1016/j.compbiomed.2023.107155. Epub 2023 Jun 21. Comput Biol Med. 2023. PMID: 37356289

6

'Bingo'-a large language model- and graph neural network-based workflow for the prediction of essential genes from protein data.

Ma J, Song J, Young ND, Chang BCH, Korhonen PK, Campos TL, Liu H, Gasser RB. Ma J, et al. Among authors: gasser rb. Brief Bioinform. 2023 Nov 22;25(1):bbad472. doi: 10.1093/bib/bbad472. Brief Bioinform. 2023. PMID: 38152979 Free PMC article.

7

SCREEN: A Graph-based Contrastive Learning Tool to Infer Catalytic Residues and Assess Enzyme Mutations.

Pan T, Bi Y, Wang X, Zhang Y, Webb GI, Gasser RB, Kurgan L, Song J. Pan T, et al. Among authors: gasser rb. Genomics Proteomics Bioinformatics. 2024 Dec 26:qzae094. doi: 10.1093/gpbjnl/qzae094. Online ahead of print. Genomics Proteomics Bioinformatics. 2024. PMID: 39724324 Free article.

8

Mitochondrial genomic investigation reveals a clear association between species and genotypes of Lucilia and geographic origin in Australia.

Kapoor S, Young ND, Yang YT, Batterham P, Gasser RB, Bowles VM, Anstead CA, Perry T. Kapoor S, et al. Among authors: gasser rb. Parasit Vectors. 2023 Aug 13;16(1):279. doi: 10.1186/s13071-023-05902-1. Parasit Vectors. 2023. PMID: 37573420 Free PMC article.

9

Inference of essential genes in Brugia malayi and Onchocerca volvulus by machine learning and the implications for discovering new interventions.

Campos TL, Korhonen PK, Young ND, Chang BCH, Gasser RB. Campos TL, et al. Among authors: gasser rb. Comput Struct Biotechnol J. 2024 Aug 2;23:3081-3089. doi: 10.1016/j.csbj.2024.07.025. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39185442 Free PMC article.

10

Neoliberalism in academia: reflections from a parasitologist.

Gasser RB. Gasser RB. Parasit Vectors. 2024 Nov 24;17(1):487. doi: 10.1186/s13071-024-06574-1. Parasit Vectors. 2024. PMID: 39582015 Free PMC article. Review.

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