Nesvizhskii AI - Search Results

1

Efficient Analysis of Proteome-Wide FPOP Data by FragPipe.

Rojas Ramírez C, Espino JA, Jones LM, Polasky DA, Nesvizhskii AI. Rojas Ramírez C, et al. Among authors: nesvizhskii ai. Anal Chem. 2023 Nov 7;95(44):16131-16137. doi: 10.1021/acs.analchem.3c02388. Epub 2023 Oct 25. Anal Chem. 2023. PMID: 37878603

2

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

Kochen MA, Chambers MC, Holman JD, Nesvizhskii AI, Weintraub ST, Belisle JT, Islam MN, Griss J, Tabb DL. Kochen MA, et al. Among authors: nesvizhskii ai. Anal Chem. 2016 Jun 7;88(11):5733-41. doi: 10.1021/acs.analchem.6b00021. Epub 2016 May 24. Anal Chem. 2016. PMID: 27186799 Free PMC article.

3

IMTBX and Grppr: Software for Top-Down Proteomics Utilizing Ion Mobility-Mass Spectrometry.

Avtonomov DM, Polasky DA, Ruotolo BT, Nesvizhskii AI. Avtonomov DM, et al. Among authors: nesvizhskii ai. Anal Chem. 2018 Feb 6;90(3):2369-2375. doi: 10.1021/acs.analchem.7b04999. Epub 2018 Jan 16. Anal Chem. 2018. PMID: 29278491 Free PMC article.

4

Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.

Cho KC, Clark DJ, Schnaubelt M, Teo GC, Leprevost FDV, Bocik W, Boja ES, Hiltke T, Nesvizhskii AI, Zhang H. Cho KC, et al. Among authors: nesvizhskii ai. Anal Chem. 2020 Mar 17;92(6):4217-4225. doi: 10.1021/acs.analchem.9b04418. Epub 2020 Feb 26. Anal Chem. 2020. PMID: 32058701 Free PMC article.

5

Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant.

Yu F, Haynes SE, Teo GC, Avtonomov DM, Polasky DA, Nesvizhskii AI. Yu F, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2020 Sep;19(9):1575-1585. doi: 10.1074/mcp.TIR120.002048. Epub 2020 Jul 2. Mol Cell Proteomics. 2020. PMID: 32616513 Free PMC article.

6

Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco.

Polasky DA, Yu F, Teo GC, Nesvizhskii AI. Polasky DA, et al. Among authors: nesvizhskii ai. Nat Methods. 2020 Nov;17(11):1125-1132. doi: 10.1038/s41592-020-0967-9. Epub 2020 Oct 5. Nat Methods. 2020. PMID: 33020657 Free PMC article.

7

Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine.

Teo GC, Polasky DA, Yu F, Nesvizhskii AI. Teo GC, et al. Among authors: nesvizhskii ai. J Proteome Res. 2021 Jan 1;20(1):498-505. doi: 10.1021/acs.jproteome.0c00544. Epub 2020 Dec 17. J Proteome Res. 2021. PMID: 33332123 Free PMC article.

8

Multiattribute Glycan Identification and FDR Control for Glycoproteomics.

Polasky DA, Geiszler DJ, Yu F, Nesvizhskii AI. Polasky DA, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2022 Mar;21(3):100205. doi: 10.1016/j.mcpro.2022.100205. Epub 2022 Jan 26. Mol Cell Proteomics. 2022. PMID: 35091091 Free PMC article.

9

Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation.

Yan T, Palmer AB, Geiszler DJ, Polasky DA, Boatner LM, Burton NR, Armenta E, Nesvizhskii AI, Backus KM. Yan T, et al. Among authors: nesvizhskii ai. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23. Anal Chem. 2022. PMID: 35195394

10

Comparative Evaluation of Proteome Discoverer and FragPipe for the TMT-Based Proteome Quantification.

He T, Liu Y, Zhou Y, Li L, Wang H, Chen S, Gao J, Jiang W, Yu Y, Ge W, Chang HY, Fan Z, Nesvizhskii AI, Guo T, Sun Y. He T, et al. Among authors: nesvizhskii ai. J Proteome Res. 2022 Dec 2;21(12):3007-3015. doi: 10.1021/acs.jproteome.2c00390. Epub 2022 Oct 31. J Proteome Res. 2022. PMID: 36315902

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