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Ribocentre-switch: a database of riboswitches.
Bu F, Lin X, Liao W, Lu Z, He Y, Luo Y, Peng X, Li M, Huang Y, Chen X, Xiao B, Jiang J, Deng J, Huang J, Lin T, Miao Z, Huang L. Bu F, et al. Among authors: huang l, huang j, huang y. Nucleic Acids Res. 2024 Jan 5;52(D1):D265-D272. doi: 10.1093/nar/gkad891. Nucleic Acids Res. 2024. PMID: 37855663 Free PMC article.
Structure and ion-dependent folding of k-junctions.
Li M, Deng J, Peng X, Wang J, Wilson TJ, Huang L, Lilley DMJ. Li M, et al. Among authors: huang l. RNA. 2023 Sep;29(9):1411-1422. doi: 10.1261/rna.079678.123. Epub 2023 Jun 13. RNA. 2023. PMID: 37311599 Free PMC article.
RNA structure determination: From 2D to 3D.
Deng J, Fang X, Huang L, Li S, Xu L, Ye K, Zhang J, Zhang K, Zhang QC. Deng J, et al. Among authors: huang l. Fundam Res. 2023 Jun 12;3(5):727-737. doi: 10.1016/j.fmre.2023.06.001. eCollection 2023 Sep. Fundam Res. 2023. PMID: 38933295 Free PMC article. Review.
RNA-Puzzles Round V: blind predictions of 23 RNA structures.
Bu F, Adam Y, Adamiak RW, Antczak M, de Aquino BRH, Badepally NG, Batey RT, Baulin EF, Boinski P, Boniecki MJ, Bujnicki JM, Carpenter KA, Chacon J, Chen SJ, Chiu W, Cordero P, Das NK, Das R, Dawson WK, DiMaio F, Ding F, Dock-Bregeon AC, Dokholyan NV, Dror RO, Dunin-Horkawicz S, Eismann S, Ennifar E, Esmaeeli R, Farsani MA, Ferré-D'Amaré AR, Geniesse C, Ghanim GE, Guzman HV, Hood IV, Huang L, Jain DS, Jaryani F, Jin L, Joshi A, Karelina M, Kieft JS, Kladwang W, Kmiecik S, Koirala D, Kollmann M, Kretsch RC, Kurciński M, Li J, Li S, Magnus M, Masquida B, Moafinejad SN, Mondal A, Mukherjee S, Nguyen THD, Nikolaev G, Nithin C, Nye G, Pandaranadar Jeyeram IPN, Perez A, Pham P, Piccirilli JA, Pilla SP, Pluta R, Poblete S, Ponce-Salvatierra A, Popenda M, Popenda L, Pucci F, Rangan R, Ray A, Ren A, Sarzynska J, Sha CM, Stefaniak F, Su Z, Suddala KC, Szachniuk M, Townshend R, Trachman RJ 3rd, Wang J, Wang W, Watkins A, Wirecki TK, Xiao Y, Xiong P, Xiong Y, Yang J, Yesselman JD, Zhang J, Zhang Y, Zhang Z, Zhou Y, Zok T, Zhang D, Zhang S, Żyła A, Westhof E, Miao Z. Bu F, et al. Among authors: huang l. Nat Methods. 2024 Dec 2. doi: 10.1038/s41592-024-02543-9. Online ahead of print. Nat Methods. 2024. PMID: 39623050
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