Zhu YH - Search Results

1

Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction.

Liu Z, Zhu YH, Shen LC, Xiao X, Qiu WR, Yu DJ. Liu Z, et al. Among authors: zhu yh. Comput Biol Med. 2023 Nov;166:107529. doi: 10.1016/j.compbiomed.2023.107529. Epub 2023 Sep 20. Comput Biol Med. 2023. PMID: 37748220 Free article.

2

TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning.

Hu J, Zhou XG, Zhu YH, Yu DJ, Zhang GJ. Hu J, et al. Among authors: zhu yh. IEEE/ACM Trans Comput Biol Bioinform. 2020 Jul-Aug;17(4):1419-1429. doi: 10.1109/TCBB.2019.2893634. Epub 2019 Jan 18. IEEE/ACM Trans Comput Biol Bioinform. 2020. PMID: 30668479

3

DNAPred: Accurate Identification of DNA-Binding Sites from Protein Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines.

Zhu YH, Hu J, Song XN, Yu DJ. Zhu YH, et al. J Chem Inf Model. 2019 Jun 24;59(6):3057-3071. doi: 10.1021/acs.jcim.8b00749. Epub 2019 Apr 16. J Chem Inf Model. 2019. PMID: 30943723

4

Boosting Granular Support Vector Machines for the Accurate Prediction of Protein-Nucleotide Binding Sites.

Zhu YH, Hu J, Qi Y, Song XN, Yu DJ. Zhu YH, et al. Comb Chem High Throughput Screen. 2019;22(7):455-469. doi: 10.2174/1386207322666190925125524. Comb Chem High Throughput Screen. 2019. PMID: 31553288

5

SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.

Chen MC, Li Y, Zhu YH, Ge F, Yu DJ. Chen MC, et al. Among authors: zhu yh. J Chem Inf Model. 2020 Jun 22;60(6):3295-3303. doi: 10.1021/acs.jcim.9b01207. Epub 2020 May 15. J Chem Inf Model. 2020. PMID: 32338512

6

Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features.

Zhu YH, Hu J, Ge F, Li F, Song J, Zhang Y, Yu DJ. Zhu YH, et al. Brief Bioinform. 2021 May 20;22(3):bbaa076. doi: 10.1093/bib/bbaa076. Brief Bioinform. 2021. PMID: 32436937

7

TargetMM: Accurate Missense Mutation Prediction by Utilizing Local and Global Sequence Information with Classifier Ensemble.

Ge F, Hu J, Zhu YH, Arif M, Yu DJ. Ge F, et al. Among authors: zhu yh. Comb Chem High Throughput Screen. 2022;25(1):38-52. doi: 10.2174/1386207323666201204140438. Comb Chem High Throughput Screen. 2022. PMID: 33280588

8

TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features.

Hu J, Rao L, Zhu YH, Zhang GJ, Yu DJ. Hu J, et al. Among authors: zhu yh. J Chem Inf Model. 2021 Jan 25;61(1):505-515. doi: 10.1021/acs.jcim.0c00735. Epub 2021 Jan 7. J Chem Inf Model. 2021. PMID: 33410688

9

Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation.

Liu Y, Zhu YH, Song X, Song J, Yu DJ. Liu Y, et al. Among authors: zhu yh. Brief Bioinform. 2021 Sep 2;22(5):bbab001. doi: 10.1093/bib/bbab001. Brief Bioinform. 2021. PMID: 33537753 Free PMC article.

10

Improving protein fold recognition using triplet network and ensemble deep learning.

Liu Y, Han K, Zhu YH, Zhang Y, Shen LC, Song J, Yu DJ. Liu Y, et al. Among authors: zhu yh. Brief Bioinform. 2021 Nov 5;22(6):bbab248. doi: 10.1093/bib/bbab248. Brief Bioinform. 2021. PMID: 34226918 Free PMC article.

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