Hirakis SP - Search Results

1

Protein Kinase Structure and Dynamics: Role of the αC-β4 Loop.

Wu J, Jonniya NA, Hirakis SP, Olivieri C, Veglia G, Kornev AP, Taylor SS. Wu J, et al. Among authors: hirakis sp. bioRxiv [Preprint]. 2023 Oct 16:2023.08.31.555822. doi: 10.1101/2023.08.31.555822. bioRxiv. 2023. Update in: Elife. 2024 Dec 04;12:RP91980. doi: 10.7554/eLife.91980 PMID: 37693538 Free PMC article. Updated. Preprint.

2

Role of the αC-β4 loop in protein kinase structure and dynamics.

Wu J, Jonniya NA, Hirakis SP, Olivieri C, Veglia G, Kornev AP, Taylor SS. Wu J, et al. Among authors: hirakis sp. Elife. 2024 Dec 4;12:RP91980. doi: 10.7554/eLife.91980. Elife. 2024. PMID: 39630082 Free PMC article.

3

Molecular Simulations Reveal an Unresolved Conformation of the Type IA Protein Kinase A Regulatory Subunit and Suggest Its Role in the cAMP Regulatory Mechanism.

Hirakis SP, Malmstrom RD, Amaro RE. Hirakis SP, et al. Biochemistry. 2017 Aug 1;56(30):3885-3888. doi: 10.1021/acs.biochem.7b00461. Epub 2017 Jul 17. Biochemistry. 2017. PMID: 28661131 Free PMC article.

4

Bridging scales through multiscale modeling: a case study on protein kinase A.

Boras BW, Hirakis SP, Votapka LW, Malmstrom RD, Amaro RE, McCulloch AD. Boras BW, et al. Among authors: hirakis sp. Front Physiol. 2015 Sep 9;6:250. doi: 10.3389/fphys.2015.00250. eCollection 2015. Front Physiol. 2015. PMID: 26441670 Free PMC article. Review.

5

Multiscale computational modeling of the effects of 2'-deoxy-ATP on cardiac muscle calcium handling.

Hock MT, Teitgen AE, McCabe KJ, Hirakis SP, Huber GA, Regnier M, Amaro RE, McCammon JA, McCulloch AD. Hock MT, et al. Among authors: hirakis sp. J Appl Phys. 2023 Aug 21;134(7):074905. doi: 10.1063/5.0157935. Epub 2023 Aug 16. J Appl Phys. 2023. PMID: 37601331 Free PMC article.

6

Development of Allosteric Small Molecule APOBEC3B Inhibitors from In Silico Screening.

Jones KFM, Demir Ö, Wyllie MK, Grillo MJ, Morris C, Hirakis SP, Kardile RD, Walters MA, Harris RS, Amaro RE, Harki DA. Jones KFM, et al. Among authors: hirakis sp. bioRxiv [Preprint]. 2024 Apr 25:2024.04.25.591187. doi: 10.1101/2024.04.25.591187. bioRxiv. 2024. PMID: 38712210 Free PMC article. Preprint.

7

Electrophysical cardiac remodeling at the molecular level: Insights into ryanodine receptor activation and calcium-induced calcium release from a stochastic explicit-particle model.

Hirakis SP, Bartol TM, Autin L, Amaro RE, Sejnowski TJ. Hirakis SP, et al. Biophys J. 2024 Nov 5;123(21):3812-3831. doi: 10.1016/j.bpj.2024.09.029. Epub 2024 Oct 5. Biophys J. 2024. PMID: 39369273

8

Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.

Buffalo CZ, Bahn-Suh AJ, Hirakis SP, Biswas T, Amaro RE, Nizet V, Ghosh P. Buffalo CZ, et al. Among authors: hirakis sp. Nat Microbiol. 2016 Sep 5;1(11):16155. doi: 10.1038/nmicrobiol.2016.155. Nat Microbiol. 2016. PMID: 27595425 Free PMC article.

9

Erratum: Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.

Buffalo CZ, Bahn-Suh AJ, Hirakis SP, Biswas T, Amaro RE, Nizet V, Ghosh P. Buffalo CZ, et al. Among authors: hirakis sp. Nat Microbiol. 2017 Jun 12;2:17107. doi: 10.1038/nmicrobiol.2017.107. Nat Microbiol. 2017. PMID: 28604710

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