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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV. Steindorff AS, et al. Among authors: haridas s. Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w. Commun Biol. 2024. PMID: 39266695 Free PMC article.
Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. citricarpa based on phylogenomic analyses.
van Ingen-Buijs VA, van Westerhoven AC, Skiadas P, Zuijdgeest XCL, Haridas S, Daum C, Duffy K, Guo J, Hundley H, LaButti K, Lipzen A, Pangilinan J, Riley R, Wang J, Yan M, Martin F, Barry K, Grigoriev IV, Groenewald JZ, Crous PW, Seidl MF. van Ingen-Buijs VA, et al. Among authors: haridas s. Fungal Genet Biol. 2024 Sep 5;175:103925. doi: 10.1016/j.fgb.2024.103925. Online ahead of print. Fungal Genet Biol. 2024. PMID: 39244012 Free article.
Neurospora intermedia from a traditional fermented food enables waste-to-food conversion.
Maini Rekdal V, Villalobos-Escobedo JM, Rodriguez-Valeron N, Olaizola Garcia M, Prado Vásquez D, Rosales A, Sörensen PM, Baidoo EEK, Calheiros de Carvalho A, Riley R, Lipzen A, He G, Yan M, Haridas S, Daum C, Yoshinaga Y, Ng V, Grigoriev IV, Munk R, Wijaya CH, Nuraida L, Damayanti I, Cruz-Morales P, Keasling JD. Maini Rekdal V, et al. Among authors: haridas s. Nat Microbiol. 2024 Oct;9(10):2666-2683. doi: 10.1038/s41564-024-01799-3. Epub 2024 Aug 29. Nat Microbiol. 2024. PMID: 39209985 Free PMC article.
Draft genome sequence of the Tremellomycetes yeast Papiliotrema laurentii 5307AH, isolated from aircraft.
Roman VA, Haridas S, Hung CS, Pangilinan J, Lipzen A, Na H, Yan M, Ng V, Grigoriev IV, Biffinger J, Barlow D, Kelley-Loughnane N, Crookes-Goodson WJ, Varaljay VA, Stamps BW. Roman VA, et al. Among authors: haridas s. Microbiol Resour Announc. 2024 Aug 13;13(8):e0014124. doi: 10.1128/mra.00141-24. Epub 2024 Jul 5. Microbiol Resour Announc. 2024. PMID: 38967461 Free PMC article.
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
Baroncelli R, Cobo-Díaz JF, Benocci T, Peng M, Battaglia E, Haridas S, Andreopoulos W, LaButti K, Pangilinan J, Lipzen A, Koriabine M, Bauer D, Le Floch G, Mäkelä MR, Drula E, Henrissat B, Grigoriev IV, Crouch JA, de Vries RP, Sukno SA, Thon MR. Baroncelli R, et al. Among authors: haridas s. Gigascience. 2024 Jan 2;13:giae036. doi: 10.1093/gigascience/giae036. Gigascience. 2024. PMID: 38940768 Free PMC article.
The differential virulence of Fusarium strains causing corneal infections and plant diseases is associated with accessory chromosome composition.
Ayhan DH, Abbondante S, Martínez-Soto D, Milo S, Rickelton K, Sohrab V, Kotera S, Arie T, Marshall ME, Rocha MC, Haridas S, Grigoriev IV, Shlezinger N, Pearlman E, Ma LJ. Ayhan DH, et al. Among authors: haridas s. bioRxiv [Preprint]. 2024 May 24:2024.05.23.595639. doi: 10.1101/2024.05.23.595639. bioRxiv. 2024. PMID: 38826335 Free PMC article. Preprint.
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR. Czajka JJ, et al. Among authors: haridas s. Front Bioeng Biotechnol. 2024 Apr 4;12:1356551. doi: 10.3389/fbioe.2024.1356551. eCollection 2024. Front Bioeng Biotechnol. 2024. PMID: 38638323 Free PMC article.
104 results