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An end-to-end workflow for non-destructive 3D pathology.
Bishop KW, Barner LAE, Han Q, Baraznenok E, Lan L, Poudel C, Gao G, Serafin RB, Chow SSL, Glaser AK, Janowczyk A, Brenes D, Huang H, Miyasato D, True LD, Kang S, Vaughan JC, Liu JTC. Bishop KW, et al. Among authors: liu jtc. bioRxiv [Preprint]. 2023 Aug 6:2023.08.03.551845. doi: 10.1101/2023.08.03.551845. bioRxiv. 2023. Update in: Nat Protoc. 2024 Apr;19(4):1122-1148. doi: 10.1038/s41596-023-00934-4 PMID: 37577615 Free PMC article. Updated. Preprint.
Visual Assessment of 2-Dimensional Levels Within 3-Dimensional Pathology Data Sets of Prostate Needle Biopsies Reveals Substantial Spatial Heterogeneity.
Koyuncu C, Janowczyk A, Farre X, Pathak T, Mirtti T, Fernandez PL, Pons L, Reder NP, Serafin R, Chow SSL, Viswanathan VS, Glaser AK, True LD, Liu JTC, Madabhushi A. Koyuncu C, et al. Among authors: liu jtc. Lab Invest. 2023 Dec;103(12):100265. doi: 10.1016/j.labinv.2023.100265. Epub 2023 Oct 18. Lab Invest. 2023. PMID: 37858679 Free PMC article.
Analysis of 3D pathology samples using weakly supervised AI.
Song AH, Williams M, Williamson DFK, Chow SSL, Jaume G, Gao G, Zhang A, Chen B, Baras AS, Serafin R, Colling R, Downes MR, Farré X, Humphrey P, Verrill C, True LD, Parwani AV, Liu JTC, Mahmood F. Song AH, et al. Among authors: liu jtc. Cell. 2024 May 9;187(10):2502-2520.e17. doi: 10.1016/j.cell.2024.03.035. Cell. 2024. PMID: 38729110
Direct three-dimensional segmentation of prostate glands with nnU-Net.
Wang R, Chow SSL, Serafin RB, Xie W, Han Q, Baraznenok E, Lan L, Bishop KW, Liu JTC. Wang R, et al. Among authors: liu jtc. J Biomed Opt. 2024 Mar;29(3):036001. doi: 10.1117/1.JBO.29.3.036001. Epub 2024 Mar 1. J Biomed Opt. 2024. PMID: 38434772 Free PMC article.
An end-to-end workflow for nondestructive 3D pathology.
Bishop KW, Erion Barner LA, Han Q, Baraznenok E, Lan L, Poudel C, Gao G, Serafin RB, Chow SSL, Glaser AK, Janowczyk A, Brenes D, Huang H, Miyasato D, True LD, Kang S, Vaughan JC, Liu JTC. Bishop KW, et al. Among authors: liu jtc. Nat Protoc. 2024 Apr;19(4):1122-1148. doi: 10.1038/s41596-023-00934-4. Epub 2024 Jan 23. Nat Protoc. 2024. PMID: 38263522 Review.
99 results