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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.
Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, Haas FB, Hiss M, Perroud PF, Jawdy SS, Yang Y, Hu R, Johnson J, Kropat J, Gallaher SD, Lipzen A, Shakirov EV, Weng X, Torres-Jerez I, Weers B, Conde D, Pappas MR, Liu L, Muchlinski A, Jiang H, Shyu C, Huang P, Sebastian J, Laiben C, Medlin A, Carey S, Carrell AA, Chen JG, Perales M, Swaminathan K, Allona I, Grattapaglia D, Cooper EA, Tholl D, Vogel JP, Weston DJ, Yang X, Brutnell TP, Kellogg EA, Baxter I, Udvardi M, Tang Y, Mockler TC, Juenger TE, Mullet J, Rensing SA, Tuskan GA, Merchant SS, Stacey G, Schmutz J. Sreedasyam A, et al. Among authors: jenkins jw. Nucleic Acids Res. 2023 Sep 8;51(16):8383-8401. doi: 10.1093/nar/gkad616. Nucleic Acids Res. 2023. PMID: 37526283 Free PMC article.
Genome resources for three modern cotton lines guide future breeding efforts.
Sreedasyam A, Lovell JT, Mamidi S, Khanal S, Jenkins JW, Plott C, Bryan KB, Li Z, Shu S, Carlson J, Goodstein D, De Santiago L, Kirkbride RC, Calleja S, Campbell T, Koebernick JC, Dever JK, Scheffler JA, Pauli D, Jenkins JN, McCarty JC, Williams M, Boston L, Webber J, Udall JA, Chen ZJ, Bourland F, Stiller WN, Saski CA, Grimwood J, Chee PW, Jones DC, Schmutz J. Sreedasyam A, et al. Among authors: jenkins jw. Nat Plants. 2024 Jun;10(6):1039-1051. doi: 10.1038/s41477-024-01713-z. Epub 2024 May 30. Nat Plants. 2024. PMID: 38816498 Free PMC article.
Th17-inducing dendritic cell vaccines stimulate effective CD4 T cell-dependent antitumor immunity in ovarian cancer that overcomes resistance to immune checkpoint blockade.
Luo Y, Shreeder B, Jenkins JW, Shi H, Lamichhane P, Zhou K, Bahr DA, Kurian S, Jones KA, Daum JI, Dutta N, Necela BM, Cannon MJ, Block MS, Knutson KL. Luo Y, et al. Among authors: jenkins jw. J Immunother Cancer. 2023 Nov;11(11):e007661. doi: 10.1136/jitc-2023-007661. J Immunother Cancer. 2023. PMID: 37918918 Free PMC article.
Haplotype-resolved genome assembly of Populus tremula × P. alba reveals aspen-specific megabase satellite DNA.
Zhou R, Jenkins JW, Zeng Y, Shu S, Jang H, Harding SA, Williams M, Plott C, Barry KW, Koriabine M, Amirebrahimi M, Talag J, Rajasekar S, Grimwood J, Schmitz RJ, Dawe RK, Schmutz J, Tsai CJ. Zhou R, et al. Among authors: jenkins jw. Plant J. 2023 Nov;116(4):1003-1017. doi: 10.1111/tpj.16454. Epub 2023 Sep 7. Plant J. 2023. PMID: 37675609 Free article.
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.
Craig RJ, Gallaher SD, Shu S, Salomé PA, Jenkins JW, Blaby-Haas CE, Purvine SO, O'Donnell S, Barry K, Grimwood J, Strenkert D, Kropat J, Daum C, Yoshinaga Y, Goodstein DM, Vallon O, Schmutz J, Merchant SS. Craig RJ, et al. Among authors: jenkins jw. Plant Cell. 2023 Feb 20;35(2):644-672. doi: 10.1093/plcell/koac347. Plant Cell. 2023. PMID: 36562730 Free PMC article.
Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
Bewg WP, Harding SA, Engle NL, Vaidya BN, Zhou R, Reeves J, Horn TW, Joshee N, Jenkins JW, Shu S, Barry KW, Yoshinaga Y, Grimwood J, Schmitz RJ, Schmutz J, Tschaplinski TJ, Tsai CJ. Bewg WP, et al. Among authors: jenkins jw. Plant Physiol. 2022 Jun 1;189(2):516-526. doi: 10.1093/plphys/kiac128. Plant Physiol. 2022. PMID: 35298644 Free PMC article.
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.
Lovell JT, Bentley NB, Bhattarai G, Jenkins JW, Sreedasyam A, Alarcon Y, Bock C, Boston LB, Carlson J, Cervantes K, Clermont K, Duke S, Krom N, Kubenka K, Mamidi S, Mattison CP, Monteros MJ, Pisani C, Plott C, Rajasekar S, Rhein HS, Rohla C, Song M, Hilaire RS, Shu S, Wells L, Webber J, Heerema RJ, Klein PE, Conner P, Wang X, Grauke LJ, Grimwood J, Schmutz J, Randall JJ. Lovell JT, et al. Among authors: jenkins jw. Nat Commun. 2021 Jul 5;12(1):4125. doi: 10.1038/s41467-021-24328-w. Nat Commun. 2021. PMID: 34226565 Free PMC article.
A willow sex chromosome reveals convergent evolution of complex palindromic repeats.
Zhou R, Macaya-Sanz D, Carlson CH, Schmutz J, Jenkins JW, Kudrna D, Sharma A, Sandor L, Shu S, Barry K, Tuskan GA, Ma T, Liu J, Olson M, Smart LB, DiFazio SP. Zhou R, et al. Among authors: jenkins jw. Genome Biol. 2020 Feb 14;21(1):38. doi: 10.1186/s13059-020-1952-4. Genome Biol. 2020. PMID: 32059685 Free PMC article.
35 results