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Page 1
Overcoming Resolution Attenuation During Tilted Cryo-EM Data Collection.
Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D. Aiyer S, et al. Among authors: benner sa. bioRxiv [Preprint]. 2023 Jul 15:2023.07.14.548955. doi: 10.1101/2023.07.14.548955. bioRxiv. 2023. Update in: Nat Commun. 2024 Jan 9;15(1):389. doi: 10.1038/s41467-023-44555-7 PMID: 37503021 Free PMC article. Updated. Preprint.
DNA Structure Design Is Improved Using an Artificially Expanded Alphabet of Base Pairs Including Loop and Mismatch Thermodynamic Parameters.
Pham TM, Miffin T, Sun H, Sharp KK, Wang X, Zhu M, Hoshika S, Peterson RJ, Benner SA, Kahn JD, Mathews DH. Pham TM, et al. Among authors: benner sa. bioRxiv [Preprint]. 2023 Jun 8:2023.06.06.543917. doi: 10.1101/2023.06.06.543917. bioRxiv. 2023. Update in: ACS Synth Biol. 2023 Sep 15;12(9):2750-2763. doi: 10.1021/acssynbio.3c00358 PMID: 37333404 Free PMC article. Updated. Preprint.
Overcoming resolution attenuation during tilted cryo-EM data collection.
Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D. Aiyer S, et al. Among authors: benner sa. Nat Commun. 2024 Jan 9;15(1):389. doi: 10.1038/s41467-023-44555-7. Nat Commun. 2024. PMID: 38195598 Free PMC article.
Enzymatic synthesis and nanopore sequencing of 12-letter supernumerary DNA.
Kawabe H, Thomas CA, Hoshika S, Kim MJ, Kim MS, Miessner L, Kaplan N, Craig JM, Gundlach JH, Laszlo AH, Benner SA, Marchand JA. Kawabe H, et al. Among authors: benner sa. Nat Commun. 2023 Oct 26;14(1):6820. doi: 10.1038/s41467-023-42406-z. Nat Commun. 2023. PMID: 37884513 Free PMC article.
Nanopores map the acid-base properties of a single site in a single DNA molecule.
Smith DC, Thomas CA, Craig JM, Brinkerhoff H, Abell SJ, Franzi MC, Carrasco JD, Hoshika S, Benner SA, Gundlach JH, Laszlo AH. Smith DC, et al. Among authors: benner sa. Nucleic Acids Res. 2024 Jul 22;52(13):7429-7436. doi: 10.1093/nar/gkae518. Nucleic Acids Res. 2024. PMID: 38884270 Free PMC article.
Assessing Readability of an 8-Letter Expanded Deoxyribonucleic Acid Alphabet with Nanopores.
Thomas CA, Craig JM, Hoshika S, Brinkerhoff H, Huang JR, Abell SJ, Kim HC, Franzi MC, Carrasco JD, Kim HJ, Smith DC, Gundlach JH, Benner SA, Laszlo AH. Thomas CA, et al. Among authors: benner sa. J Am Chem Soc. 2023 Apr 10:10.1021/jacs.3c00829. doi: 10.1021/jacs.3c00829. Online ahead of print. J Am Chem Soc. 2023. PMID: 37036666 Free PMC article.
286 results