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A predicted CRISPR-mediated symbiosis between uncultivated archaea.
Nat Microbiol. 2023 Sep;8(9):1619-1633. doi: 10.1038/s41564-023-01439-2. Epub 2023 Jul 27.
Nat Microbiol. 2023.
PMID: 37500801
Targeted Metabolomics and High-Throughput RNA Sequencing-Based Transcriptomics Reveal Massive Changes in the Streptomyces venezuelae NRRL B-65442 Metabolism Caused by Ethanol Shock.
Sekurova ON, Zehl M, Predl M, Hunyadi P, Rattei T, Zotchev SB.
Sekurova ON, et al. Among authors: predl m.
Microbiol Spectr. 2022 Dec 21;10(6):e0367222. doi: 10.1128/spectrum.03672-22. Epub 2022 Oct 31.
Microbiol Spectr. 2022.
PMID: 36314940
Free PMC article.
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Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome.
Duller S, Vrbancic S, Szydłowski Ł, Mahnert A, Blohs M, Predl M, Kumpitsch C, Zrim V, Högenauer C, Kosciolek T, Schmitz RA, Eberhard A, Dragovan M, Schmidberger L, Zurabischvili T, Weinberger V, Moser AM, Kolb D, Pernitsch D, Mohammadzadeh R, Kühnast T, Rattei T, Moissl-Eichinger C.
Duller S, et al. Among authors: predl m.
Nat Commun. 2024 Aug 31;15(1):7593. doi: 10.1038/s41467-024-52037-7.
Nat Commun. 2024.
PMID: 39217206
Free PMC article.
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ScyNet: Visualizing interactions in community metabolic models.
Predl M, Gandolf K, Hofer M, Rattei T.
Predl M, et al.
Bioinform Adv. 2024 Jul 17;4(1):vbae104. doi: 10.1093/bioadv/vbae104. eCollection 2024.
Bioinform Adv. 2024.
PMID: 39132287
Free PMC article.
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Deletions of conserved extracytoplasmic function sigma factors-encoding genes in Streptomyces have a major impact on secondary metabolism.
Sekurova ON, Zehl M, Predl M, Hunyadi P, Rattei T, Zotchev SB.
Sekurova ON, et al. Among authors: predl m.
Microb Cell Fact. 2024 Jul 18;23(1):201. doi: 10.1186/s12934-024-02479-x.
Microb Cell Fact. 2024.
PMID: 39026318
Free PMC article.
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PyCoMo: a python package for community metabolic model creation and analysis.
Predl M, Mießkes M, Rattei T, Zanghellini J.
Predl M, et al.
Bioinformatics. 2024 Mar 29;40(4):btae153. doi: 10.1093/bioinformatics/btae153.
Bioinformatics. 2024.
PMID: 38532295
Free PMC article.
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