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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
Uliano-Silva M, Ferreira JGRN, Krasheninnikova K; Darwin Tree of Life Consortium; Formenti G, Abueg L, Torrance J, Myers EW, Durbin R, Blaxter M, McCarthy SA. Uliano-Silva M, et al. Among authors: mccarthy sa. BMC Bioinformatics. 2023 Jul 18;24(1):288. doi: 10.1186/s12859-023-05385-y. BMC Bioinformatics. 2023. PMID: 37464285 Free PMC article.
The variant call format and VCFtools.
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R; 1000 Genomes Project Analysis Group. Danecek P, et al. Bioinformatics. 2011 Aug 1;27(15):2156-8. doi: 10.1093/bioinformatics/btr330. Epub 2011 Jun 7. Bioinformatics. 2011. PMID: 21653522 Free PMC article.
The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758.
Mead D, Hailer F, Chadwick E, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan JD, Dudchenko O, Omer A, Weisz D, Lieberman Aiden E, McCarthy S, Howe K, Sims Y, Torrance J, Tracey A, Challis R, Durbin R, Blaxter M. Mead D, et al. Wellcome Open Res. 2020 Feb 19;5:33. doi: 10.12688/wellcomeopenres.15722.1. eCollection 2020. Wellcome Open Res. 2020. PMID: 32258427 Free PMC article.
The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758.
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Sims Y, Torrance J, Tracey A, Howe K, Challis R, Durbin R, Blaxter M. Mead D, et al. Among authors: mccarthy sa. Wellcome Open Res. 2020 Feb 3;5:18. doi: 10.12688/wellcomeopenres.15679.1. eCollection 2020. Wellcome Open Res. 2020. PMID: 32587897 Free PMC article.
The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861).
Bista I, McCarthy SA, Wood J, Ning Z, Detrich Iii HW, Desvignes T, Postlethwait J, Chow W, Howe K, Torrance J, Smith M, Oliver K; Vertebrate Genomes Project Consortium; Miska EA, Durbin R. Bista I, et al. Among authors: mccarthy sa. Wellcome Open Res. 2020 Jun 24;5:148. doi: 10.12688/wellcomeopenres.16012.1. eCollection 2020. Wellcome Open Res. 2020. PMID: 33195818 Free PMC article.
216 results