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Page 1
Neuronal wiring diagram of an adult brain.
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, Kuehner K, Ogedengbe O, Morey R, Gager J, Kruk K, Perlman E, Yang R, Deutsch D, Bland D, Sorek M, Lu R, Macrina T, Lee K, Bae JA, Mu S, Nehoran B, Mitchell E, Popovych S, Wu J, Jia Z, Castro M, Kemnitz N, Ih D, Bates AS, Eckstein N, Funke J, Collman F, Bock DD, Jefferis GSXE, Seung HS, Murthy M; FlyWire Consortium. Dorkenwald S, et al. Among authors: yu sc. bioRxiv [Preprint]. 2023 Jul 11:2023.06.27.546656. doi: 10.1101/2023.06.27.546656. bioRxiv. 2023. Update in: Nature. 2024 Oct;634(8032):124-138. doi: 10.1038/s41586-024-07558-y PMID: 37425937 Free PMC article. Updated. Preprint.
FlyWire: online community for whole-brain connectomics.
Dorkenwald S, McKellar CE, Macrina T, Kemnitz N, Lee K, Lu R, Wu J, Popovych S, Mitchell E, Nehoran B, Jia Z, Bae JA, Mu S, Ih D, Castro M, Ogedengbe O, Halageri A, Kuehner K, Sterling AR, Ashwood Z, Zung J, Brittain D, Collman F, Schneider-Mizell C, Jordan C, Silversmith W, Baker C, Deutsch D, Encarnacion-Rivera L, Kumar S, Burke A, Bland D, Gager J, Hebditch J, Koolman S, Moore M, Morejohn S, Silverman B, Willie K, Willie R, Yu SC, Murthy M, Seung HS. Dorkenwald S, et al. Among authors: yu sc. Nat Methods. 2022 Jan;19(1):119-128. doi: 10.1038/s41592-021-01330-0. Epub 2021 Dec 23. Nat Methods. 2022. PMID: 34949809 Free PMC article.
Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity.
Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, Kemnitz N, Ih D, Silversmith WM, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Mu S, Wong W, Jordan CS, Castro M, Buchanan J, Bumbarger DJ, Takeno M, Torres R, Mahalingam G, Elabbady L, Li Y, Cobos E, Zhou P, Suckow S, Becker L, Paninski L, Polleux F, Reimer J, Tolias AS, Reid RC, da Costa NM, Seung HS. Turner NL, et al. Among authors: yu sc. Cell. 2022 Mar 17;185(6):1082-1100.e24. doi: 10.1016/j.cell.2022.01.023. Epub 2022 Feb 24. Cell. 2022. PMID: 35216674 Free PMC article.
Binary and analog variation of synapses between cortical pyramidal neurons.
Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Wong W, Castro M, Jordan CS, Wilson AM, Froudarakis E, Buchanan J, Takeno MM, Torres R, Mahalingam G, Collman F, Schneider-Mizell CM, Bumbarger DJ, Li Y, Becker L, Suckow S, Reimer J, Tolias AS, Macarico da Costa N, Reid RC, Seung HS. Dorkenwald S, et al. Among authors: yu sc. Elife. 2022 Nov 16;11:e76120. doi: 10.7554/eLife.76120. Elife. 2022. PMID: 36382887 Free PMC article.
NEURD offers automated proofreading and feature extraction for connectomics.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin A, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yu SC, Yin W, Xenes D, Kitchell LM, Rivlin PK, Rose VA, Bishop CA, Wester B, Froudarakis E, Walker EY, Sinz FH, Seung HS, Collman F, da Costa NM, Reid RC, Pitkow X, Tolias AS, Reimer J. Celii B, et al. Among authors: yu sc. bioRxiv [Preprint]. 2024 Sep 23:2023.03.14.532674. doi: 10.1101/2023.03.14.532674. bioRxiv. 2024. PMID: 36993282 Free PMC article. Preprint.
Functional connectomics reveals general wiring rule in mouse visual cortex.
Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J, Ding Z, Patel S, Ntanavara L, Froebe R, Ponder K, Muhammad T, Alexander Bae J, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Yatsenko D, Froudarakis E, Sinz F, Josić K, Rosenbaum R, Sebastian Seung H, Collman F, da Costa NM, Clay Reid R, Walker EY, Pitkow X, Reimer J, Tolias AS. Ding Z, et al. Among authors: yu sc. bioRxiv [Preprint]. 2024 Oct 14:2023.03.13.531369. doi: 10.1101/2023.03.13.531369. bioRxiv. 2024. PMID: 36993398 Free PMC article. Preprint.
Whole-brain annotation and multi-connectome cell typing quantifies circuit stereotypy in Drosophila.
Schlegel P, Yin Y, Bates AS, Dorkenwald S, Eichler K, Brooks P, Han DS, Gkantia M, Dos Santos M, Munnelly EJ, Badalamente G, Capdevila LS, Sane VA, Pleijzier MW, Tamimi IFM, Dunne CR, Salgarella I, Javier A, Fang S, Perlman E, Kazimiers T, Jagannathan SR, Matsliah A, Sterling AR, Yu SC, McKellar CE; FlyWire Consortium; Costa M, Seung HS, Murthy M, Hartenstein V, Bock DD, Jefferis GSXE. Schlegel P, et al. Among authors: yu sc. bioRxiv [Preprint]. 2023 Jul 15:2023.06.27.546055. doi: 10.1101/2023.06.27.546055. bioRxiv. 2023. Update in: Nature. 2024 Oct;634(8032):139-152. doi: 10.1038/s41586-024-07686-5 PMID: 37425808 Free PMC article. Updated. Preprint.
CAVE: Connectome Annotation Versioning Engine.
Dorkenwald S, Schneider-Mizell CM, Brittain D, Halageri A, Jordan C, Kemnitz N, Castro MA, Silversmith W, Maitin-Shephard J, Troidl J, Pfister H, Gillet V, Xenes D, Bae JA, Bodor AL, Buchanan J, Bumbarger DJ, Elabbady L, Jia Z, Kapner D, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Reid RC, da Costa NM, Seung HS, Collman F. Dorkenwald S, et al. Among authors: yu sc. bioRxiv [Preprint]. 2023 Jul 28:2023.07.26.550598. doi: 10.1101/2023.07.26.550598. bioRxiv. 2023. PMID: 37546753 Free PMC article. Preprint.
Network Statistics of the Whole-Brain Connectome of Drosophila.
Lin A, Yang R, Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Costa M, Eichler K, Bates AS, Eckstein N, Funke J, Jefferis GSXE, Murthy M. Lin A, et al. Among authors: yu sc. bioRxiv [Preprint]. 2024 Feb 28:2023.07.29.551086. doi: 10.1101/2023.07.29.551086. bioRxiv. 2024. Update in: Nature. 2024 Oct;634(8032):153-165. doi: 10.1038/s41586-024-07968-y PMID: 37547019 Free PMC article. Updated. Preprint.
Neuronal "parts list" and wiring diagram for a visual system.
Matsliah A, Yu SC, Kruk K, Bland D, Burke A, Gager J, Hebditch J, Silverman B, Willie K, Willie RW, Sorek M, Sterling AR, Kind E, Garner D, Sancer G, Wernet MF, Kim SS, Murthy M, Seung HS; FlyWire Consortium. Matsliah A, et al. Among authors: yu sc. bioRxiv [Preprint]. 2024 Apr 15:2023.10.12.562119. doi: 10.1101/2023.10.12.562119. bioRxiv. 2024. Update in: Nature. 2024 Oct;634(8032):166-180. doi: 10.1038/s41586-024-07981-1 PMID: 37873160 Free PMC article. Updated. Preprint.
769 results