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Page 1
Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS.
van Belzen IAEM, Cai C, van Tuil M, Badloe S, Strengman E, Janse A, Verwiel ETP, van der Leest DFM, Kester L, Molenaar JJ, Meijerink J, Drost J, Peng WC, Kerstens HHD, Tops BBJ, Holstege FCP, Kemmeren P, Hehir-Kwa JY. van Belzen IAEM, et al. Among authors: tops bbj. BMC Cancer. 2023 Jul 3;23(1):618. doi: 10.1186/s12885-023-11054-3. BMC Cancer. 2023. PMID: 37400763 Free PMC article.
Malignant glioma in L-2-Hydroxyglutaric Aciduria: thorough molecular characterization of a case and literature review.
Cordier F, Wesseling P, Tops BBJ, Kester L, French PJ, van den Bent M, Hinz F, Aronica E, Slot KM, Abbink F, van der Knaap MS, Kranendonk MEG. Cordier F, et al. Among authors: tops bbj. Free Neuropathol. 2024 May 3;5:5-11. doi: 10.17879/freeneuropathology-2024-5377. eCollection 2024 Jan. Free Neuropathol. 2024. PMID: 38716347 Free PMC article.
Complex structural variation is prevalent and highly pathogenic in pediatric solid tumors.
van Belzen IAEM, van Tuil M, Badloe S, Janse A, Verwiel ETP, Santoso M, de Vos S, Baker-Hernandez J, Kerstens HHD, Solleveld-Westerink N, Meister MT, Drost J, van den Heuvel-Eibrink MM, Merks JHM, Molenaar JJ, Peng WC, Tops BBJ, Holstege FCP, Kemmeren P, Hehir-Kwa JY. van Belzen IAEM, et al. Among authors: tops bbj. Cell Genom. 2024 Nov 13;4(11):100675. doi: 10.1016/j.xgen.2024.100675. Epub 2024 Oct 14. Cell Genom. 2024. PMID: 39406233 Free PMC article.
VGLL-fusions define a new class of intraparenchymal CNS schwannoma.
Schmid S, Mirchia K, Tietze A, Liu I, Siewert C, Nückles J, Schittenhelm J, Behling F, Snuderl M, Hartmann C, Brandner S, Paine SML, Korshunov A, Hasselblatt M, Coras R, Epari S, Stadelmann C, Zechel S, Simon M, Wilson Y, Gianno F, Calixto-Hope GL Jr, Zherebitskiy V, Kaimaktchiev VB, Robinson L, Aldape K, Hoving EW, Tops BBJ, Perera AA, Göller P, Hernáiz Driever P, Wesseling P, Koch A, Perry A, Sahm F, Jones DTW, Capper D. Schmid S, et al. Among authors: tops bbj. Neuro Oncol. 2024 Dec 23:noae269. doi: 10.1093/neuonc/noae269. Online ahead of print. Neuro Oncol. 2024. PMID: 39713960
DNA methylation-array interlaboratory comparison trial demonstrates highly reproducible paediatric CNS tumour classification across 13 international centres.
Chirica M, Jurmeister P, Teichmann D, Koch A, Perez E, Schmid S, Simon M, Driever PH, Bodden C, van Tilburg CM, Hardin EC, Lavarino C, Hench J, Scheie D, Cryan J, Vicha A, Buttarelli FR, Michiels A, Haberler C, Barahona P, Tops BBJ, Jacques T, Stokland T, Witt O, Jones DTW, Capper D. Chirica M, et al. Among authors: tops bbj. Neuropathol Appl Neurobiol. 2024 Oct;50(5):e13010. doi: 10.1111/nan.13010. Neuropathol Appl Neurobiol. 2024. PMID: 39410806
Correction to: Amplification of the PLAG-family genes-PLAGL1 and PLAGL2-is a key feature of the novel tumor type CNS embryonal tumor with PLAGL amplification.
Keck MK, Sill M, Wittmann A, Joshi P, Stichel D, Beck P, Okonechnikow K, Sievers P, Wefers AK, Roncaroli F, Avula S, McCabe MG, Hayden JT, Wesseling P, Øra I, Nistér M, Kranendonk MEG, Tops BBJ, Zapotocky M, Zamecnik J, Vasiljevic A, Fenouil T, Meyronet D, von Hoff K, Schüller U, Loiseau H, Figarella-Branger D, Kramm CM, Sturm D, Scheie D, Rauramaa T, Pesola J, Gojo J, Haberler C, Brandner S, Jacques T, Sexton Oates A, Saffery R, Koscielniak E, Baker SJ, Yip S, Snuderl M, Ud Din N, Samuel D, Schramm K, Blattner-Johnson M, Selt F, Ecker J, Milde T, von Deimling A, Korshunov A, Perry A, Pfister SM, Sahm F, Solomon DA, Jones DTW. Keck MK, et al. Among authors: tops bbj. Acta Neuropathol. 2023 Apr;145(4):511-514. doi: 10.1007/s00401-023-02538-4. Acta Neuropathol. 2023. PMID: 36786841 Free PMC article. No abstract available.
M&M: an RNA-seq based pan-cancer classifier for paediatric tumours.
Wallis FSA, Baker-Hernandez JL, van Tuil M, van Hamersveld C, Koudijs MJ, Verwiel ETP, Janse A, Hiemcke-Jiwa LS, de Krijger RR, Kranendonk MEG, Vermeulen MA, Wesseling P, Flucke UE, de Haas V, Luesink M, Hoving EW, Vormoor JH, van Noesel MM, Hehir-Kwa JY, Tops BBJ, Kemmeren P, Kester LA. Wallis FSA, et al. Among authors: tops bbj. EBioMedicine. 2025 Jan;111:105506. doi: 10.1016/j.ebiom.2024.105506. Epub 2024 Dec 21. EBioMedicine. 2025. PMID: 39709770 Free article.
Ultra-fast deep-learned CNS tumour classification during surgery.
Vermeulen C, Pagès-Gallego M, Kester L, Kranendonk MEG, Wesseling P, Verburg N, de Witt Hamer P, Kooi EJ, Dankmeijer L, van der Lugt J, van Baarsen K, Hoving EW, Tops BBJ, de Ridder J. Vermeulen C, et al. Among authors: tops bbj. Nature. 2023 Oct;622(7984):842-849. doi: 10.1038/s41586-023-06615-2. Epub 2023 Oct 11. Nature. 2023. PMID: 37821699 Free PMC article.
61 results