Kloczkowski A - Search Results

1

Synthesis and Molecular Docking Studies of Novel Biheterocyclic Propanamides as Antidiabetic Agents Having Mild Cytotoxicity.

Abbasi MA, Rubab K, Aziz-Ur-Rehman, Siddiqui SZ, Hassan M, Raza H, Shah SAA, Shahid M, Kloczkowski A. Abbasi MA, et al. Among authors: kloczkowski a. ACS Omega. 2023 Jun 14;8(25):22899-22911. doi: 10.1021/acsomega.3c01882. eCollection 2023 Jun 27. ACS Omega. 2023. PMID: 37396264 Free PMC article.

2

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models.

Kmiecik S, Kouza M, Badaczewska-Dawid AE, Kloczkowski A, Kolinski A. Kmiecik S, et al. Among authors: kloczkowski a. Int J Mol Sci. 2018 Nov 6;19(11):3496. doi: 10.3390/ijms19113496. Int J Mol Sci. 2018. PMID: 30404229 Free PMC article. Review.

3

Molecular modeling of phosphorylation sites in proteins using a database of local structure segments.

Plewczynski D, Jaroszewski L, Godzik A, Kloczkowski A, Rychlewski L. Plewczynski D, et al. Among authors: kloczkowski a. J Mol Model. 2005 Nov;11(6):431-8. doi: 10.1007/s00894-005-0235-z. Epub 2005 Aug 11. J Mol Model. 2005. PMID: 16094535

4

Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.

Sen TZ, Kloster M, Jernigan RL, Kolinski A, Bujnicki JM, Kloczkowski A. Sen TZ, et al. Among authors: kloczkowski a. Biophys J. 2008 Apr 1;94(7):2482-91. doi: 10.1529/biophysj.107.116046. Epub 2008 Jan 4. Biophys J. 2008. PMID: 18178655 Free PMC article.

5

Chain dimensions and fluctuations in elastomeric networks in which the junctions alternate regularly in their functionality.

Skliros A, Mark JE, Kloczkowski A. Skliros A, et al. Among authors: kloczkowski a. J Chem Phys. 2009 Feb 14;130(6):064905. doi: 10.1063/1.3063115. J Chem Phys. 2009. PMID: 19222296 Free PMC article.

A matrix method is used to determine fluctuations of junctions and points along the polymer chains making up a phantom Gaussian network that has the topology of an infinite, symmetrically grown tree. ...The present results represent significant generalizations of ea …

A matrix method is used to determine fluctuations of junctions and points along the polymer chains making up a phantom Gaussia …

6

Prediction of side chain orientations in proteins by statistical machine learning methods.

Yan A, Kloczkowski A, Hofmann H, Jernigan RL. Yan A, et al. Among authors: kloczkowski a. J Biomol Struct Dyn. 2007 Dec;25(3):275-88. doi: 10.1080/07391102.2007.10507176. J Biomol Struct Dyn. 2007. PMID: 17937489

7

A Consensus Data Mining secondary structure prediction by combining GOR V and Fragment Database Mining.

Sen TZ, Cheng H, Kloczkowski A, Jernigan RL. Sen TZ, et al. Among authors: kloczkowski a. Protein Sci. 2006 Nov;15(11):2499-506. doi: 10.1110/ps.062125306. Epub 2006 Sep 25. Protein Sci. 2006. PMID: 17001039 Free PMC article.

8

Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach.

Rashid S, Saraswathi S, Kloczkowski A, Sundaram S, Kolinski A. Rashid S, et al. Among authors: kloczkowski a. BMC Bioinformatics. 2016 Sep 13;17(1):362. doi: 10.1186/s12859-016-1209-0. BMC Bioinformatics. 2016. PMID: 27618812 Free PMC article.

9

The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.

Sen TZ, Feng Y, Garcia JV, Kloczkowski A, Jernigan RL. Sen TZ, et al. Among authors: kloczkowski a. J Chem Theory Comput. 2006;2(3):696-704. doi: 10.1021/ct600060d. J Chem Theory Comput. 2006. PMID: 17710199 Free PMC article.

10

Effects of protein subunits removal on the computed motions of partial 30S structures of the ribosome.

Yan A, Wang Y, Kloczkowski A, Jernigan RL. Yan A, et al. Among authors: kloczkowski a. J Chem Theory Comput. 2008 Sep 20;4(10):1757-1767. doi: 10.1021/ct800223g. J Chem Theory Comput. 2008. PMID: 19771145 Free PMC article.

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