Yamane T - Search Results

1

Dynamic Solution Structures of Whole Human NAP1 Dimer Bound to One and Two Histone H2A-H2B Heterodimers Obtained by Integrative Methods.

Ohtomo H, Yamane T, Oda T, Kodera N, Kurita JI, Tsunaka Y, Amyot R, Ikeguchi M, Nishimura Y. Ohtomo H, et al. Among authors: yamane t. J Mol Biol. 2023 Aug 1;435(15):168189. doi: 10.1016/j.jmb.2023.168189. Epub 2023 Jun 26. J Mol Biol. 2023. PMID: 37380014 Free article.

2

Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.

Yamane T, Okamura H, Ikeguchi M, Nishimura Y, Kidera A. Yamane T, et al. Proteins. 2008 Jun;71(4):1970-83. doi: 10.1002/prot.21874. Proteins. 2008. PMID: 18186481

3

Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3.

Sekiyama N, Ikegami T, Yamane T, Ikeguchi M, Uchimura Y, Baba D, Ariyoshi M, Tochio H, Saitoh H, Shirakawa M. Sekiyama N, et al. Among authors: yamane t. J Biol Chem. 2008 Dec 19;283(51):35966-75. doi: 10.1074/jbc.M802528200. Epub 2008 Oct 7. J Biol Chem. 2008. PMID: 18842587 Free article.

4

Side-chain conformational changes of transcription factor PhoB upon DNA binding: a population-shift mechanism.

Yamane T, Okamura H, Nishimura Y, Kidera A, Ikeguchi M. Yamane T, et al. J Am Chem Soc. 2010 Sep 15;132(36):12653-9. doi: 10.1021/ja103218x. J Am Chem Soc. 2010. PMID: 20722414

5

Functional rotation induced by alternating protonation states in the multidrug transporter AcrB: all-atom molecular dynamics simulations.

Yamane T, Murakami S, Ikeguchi M. Yamane T, et al. Biochemistry. 2013 Oct 29;52(43):7648-58. doi: 10.1021/bi400119v. Epub 2013 Oct 18. Biochemistry. 2013. PMID: 24083838

6

Solution structure of the isolated histone H2A-H2B heterodimer.

Moriwaki Y, Yamane T, Ohtomo H, Ikeguchi M, Kurita J, Sato M, Nagadoi A, Shimojo H, Nishimura Y. Moriwaki Y, et al. Among authors: yamane t. Sci Rep. 2016 May 16;6:24999. doi: 10.1038/srep24999. Sci Rep. 2016. PMID: 27181506 Free PMC article.

7

Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB.

Matsunaga Y, Yamane T, Terada T, Moritsugu K, Fujisaki H, Murakami S, Ikeguchi M, Kidera A. Matsunaga Y, et al. Among authors: yamane t. Elife. 2018 Mar 6;7:e31715. doi: 10.7554/eLife.31715. Elife. 2018. PMID: 29506651 Free PMC article.

8

Ionic scattering factors of atoms that compose biological molecules.

Yonekura K, Matsuoka R, Yamashita Y, Yamane T, Ikeguchi M, Kidera A, Maki-Yonekura S. Yonekura K, et al. Among authors: yamane t. IUCrJ. 2018 Apr 27;5(Pt 3):348-353. doi: 10.1107/S2052252518005237. eCollection 2018 May 1. IUCrJ. 2018. PMID: 29755750 Free PMC article.

9

Elimination of Finite-Size Effects on Binding Free Energies via the Warp-Drive Method.

Ekimoto T, Yamane T, Ikeguchi M. Ekimoto T, et al. Among authors: yamane t. J Chem Theory Comput. 2018 Dec 11;14(12):6544-6559. doi: 10.1021/acs.jctc.8b00280. Epub 2018 Nov 21. J Chem Theory Comput. 2018. PMID: 30404450

10

Mechanism of Vitamin D Receptor Ligand-Binding Domain Regulation Studied by gREST Simulations.

Ekimoto T, Kudo T, Yamane T, Ikeguchi M. Ekimoto T, et al. Among authors: yamane t. J Chem Inf Model. 2021 Jul 26;61(7):3625-3637. doi: 10.1021/acs.jcim.1c00534. Epub 2021 Jun 30. J Chem Inf Model. 2021. PMID: 34189910 Free article.

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