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Page 1
A standardized quantitative analysis strategy for stable isotope probing metagenomics.
Vyshenska D, Sampara P, Singh K, Tomatsu A, Kauffman WB, Nuccio EE, Blazewicz SJ, Pett-Ridge J, Louie KB, Varghese N, Kellom M, Clum A, Riley R, Roux S, Eloe-Fadrosh EA, Ziels RM, Malmstrom RR. Vyshenska D, et al. Among authors: varghese n. mSystems. 2023 Aug 31;8(4):e0128022. doi: 10.1128/msystems.01280-22. Epub 2023 Jun 28. mSystems. 2023. PMID: 37377419 Free PMC article.
Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm.
Woo HL, O'Dell KB, Utturkar S, McBride KR, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD, Hazen TC. Woo HL, et al. Among authors: varghese n. Genome Announc. 2016 Nov 23;4(6):e01297-16. doi: 10.1128/genomeA.01297-16. Genome Announc. 2016. PMID: 27881538 Free PMC article.
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.
Chen IA, Chu K, Palaniappan K, Pillay M, Ratner A, Huang J, Huntemann M, Varghese N, White JR, Seshadri R, Smirnova T, Kirton E, Jungbluth SP, Woyke T, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC. Chen IA, et al. Among authors: varghese n. Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677. doi: 10.1093/nar/gky901. Nucleic Acids Res. 2019. PMID: 30289528 Free PMC article.
High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants.
Kopac S, Beatty H, Gialopsos P, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Ng V, Ivanova N, Kyrpides N, Woyke T, Klassen JL. Kopac S, et al. Among authors: varghese n. Microbiol Resour Announc. 2018 Jul 19;7(2):e00871-18. doi: 10.1128/MRA.00871-18. eCollection 2018 Jul. Microbiol Resour Announc. 2018. PMID: 30533809 Free PMC article.
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Nowinski B, Smith CB, Thomas CM, Esson K, Marin R 3rd, Preston CM, Birch JM, Scholin CA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Whitman WB, Kiene RP, Eloe-Fadrosh EA, Moran MA. Nowinski B, et al. Among authors: varghese n. Sci Data. 2019 Jul 22;6(1):129. doi: 10.1038/s41597-019-0132-4. Sci Data. 2019. PMID: 31332186 Free PMC article.
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
Camargo AP, de Souza RSC, de Britto Costa P, Gerhardt IR, Dante RA, Teodoro GS, Abrahão A, Lambers H, Carazzolle MF, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Pennacchio C, Eloe-Fadrosh EA, Arruda P, Oliveira RS. Camargo AP, et al. Among authors: varghese n. Sci Data. 2019 Jul 31;6(1):140. doi: 10.1038/s41597-019-0141-3. Sci Data. 2019. PMID: 31366912 Free PMC article.
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Högfors-Rönnholm E, Lopez-Fernandez M, Christel S, Brambilla D, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Lundin D, Engblom S, Dopson M. Högfors-Rönnholm E, et al. Among authors: varghese n. Sci Data. 2019 Oct 16;6(1):207. doi: 10.1038/s41597-019-0222-3. Sci Data. 2019. PMID: 31619684 Free PMC article.
Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.
Bell TH, Trexler RV, Peng X, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Ivanova NN, Kyrpides NC, Pennacchio C, Eloe-Fadrosh EA, Bruns MA. Bell TH, et al. Among authors: varghese n. Microbiol Resour Announc. 2020 Jan 2;9(1):e01361-19. doi: 10.1128/MRA.01361-19. Microbiol Resour Announc. 2020. PMID: 31896648 Free PMC article.
One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil.
Eichorst SA, Trojan D, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Goodwin LA, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Woebken D. Eichorst SA, et al. Among authors: varghese n. Microbiol Resour Announc. 2020 Jan 30;9(5):e01087-19. doi: 10.1128/MRA.01087-19. Microbiol Resour Announc. 2020. PMID: 32001557 Free PMC article.
279 results