Shtokalo D - Search Results

1

RNAseq profiling of blood from patients with coronary artery disease: Signature of a T cell imbalance.

McCaffrey TA, Toma I, Yang Z, Katz R, Reiner J, Mazhari R, Shah P, Falk Z, Wargowsky R, Goldman J, Jones D, Shtokalo D, Antonets D, Jepson T, Fetisova A, Jaatinen K, Ree N, Ri M. McCaffrey TA, et al. Among authors: shtokalo d. J Mol Cell Cardiol Plus. 2023 Jun;4:100033. doi: 10.1016/j.jmccpl.2023.100033. Epub 2023 Mar 25. J Mol Cell Cardiol Plus. 2023. PMID: 37303712 Free PMC article.

2

RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model.

St Laurent G 3rd, Toma I, Seilheimer B, Cesnulevicius K, Schultz M, Tackett M, Zhou J, Ri M, Shtokalo D, Antonets D, Jepson T, McCaffrey TA. St Laurent G 3rd, et al. Among authors: shtokalo d. BMC Genomics. 2021 Nov 25;22(1):854. doi: 10.1186/s12864-021-08083-2. BMC Genomics. 2021. PMID: 34823472 Free PMC article.

3

Deep Sequencing Transcriptome Analysis of Murine Wound Healing: Effects of a Multicomponent, Multitarget Natural Product Therapy-Tr14.

St Laurent G 3rd, Seilheimer B, Tackett M, Zhou J, Shtokalo D, Vyatkin Y, Ri M, Toma I, Jones D, McCaffrey TA. St Laurent G 3rd, et al. Among authors: shtokalo d. Front Mol Biosci. 2017 Aug 17;4:57. doi: 10.3389/fmolb.2017.00057. eCollection 2017. Front Mol Biosci. 2017. PMID: 28879183 Free PMC article.

4

Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts.

McCaffrey TA, St Laurent G 3rd, Shtokalo D, Antonets D, Vyatkin Y, Jones D, Battison E, Nigg JT. McCaffrey TA, et al. Among authors: shtokalo d. BMC Med Genomics. 2020 Oct 28;13(1):160. doi: 10.1186/s12920-020-00808-8. BMC Med Genomics. 2020. PMID: 33115496 Free PMC article.

5

Functional annotation of the vlinc class of non-coding RNAs using systems biology approach.

St Laurent G, Vyatkin Y, Antonets D, Ri M, Qi Y, Saik O, Shtokalo D, de Hoon MJ, Kawaji H, Itoh M, Lassmann T, Arner E, Forrest AR; FANTOM consortium; Nicolas E, McCaffrey TA, Carninci P, Hayashizaki Y, Wahlestedt C, Kapranov P. St Laurent G, et al. Among authors: shtokalo d. Nucleic Acids Res. 2016 Apr 20;44(7):3233-52. doi: 10.1093/nar/gkw162. Epub 2016 Mar 21. Nucleic Acids Res. 2016. PMID: 27001520 Free PMC article.

6

Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells.

Sherstyuk VV, Medvedev SP, Elisaphenko EA, Vaskova EA, Ri MT, Vyatkin YV, Saik OV, Shtokalo DN, Pokushalov EA, Zakian SM. Sherstyuk VV, et al. Sci Rep. 2017 Jun 5;7(1):2787. doi: 10.1038/s41598-017-02632-0. Sci Rep. 2017. PMID: 28584262 Free PMC article.

7

On the importance of small changes in RNA expression.

St Laurent G, Shtokalo D, Tackett MR, Yang Z, Vyatkin Y, Milos PM, Seilheimer B, McCaffrey TA, Kapranov P. St Laurent G, et al. Among authors: shtokalo d. Methods. 2013 Sep 1;63(1):18-24. doi: 10.1016/j.ymeth.2013.03.027. Epub 2013 Apr 4. Methods. 2013. PMID: 23563143

8

CellCountCV-A Web-Application for Accurate Cell Counting and Automated Batch Processing of Microscopic Images Using Fully Convolutional Neural Networks.

Antonets D, Russkikh N, Sanchez A, Kovalenko V, Bairamova E, Shtokalo D, Medvedev S, Zakian S. Antonets D, et al. Among authors: shtokalo d. Sensors (Basel). 2020 Jun 29;20(13):3653. doi: 10.3390/s20133653. Sensors (Basel). 2020. PMID: 32610652 Free PMC article.

9

Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis.

Russkikh N, Antonets D, Shtokalo D, Makarov A, Vyatkin Y, Zakharov A, Terentyev E. Russkikh N, et al. Among authors: shtokalo d. Bioinformatics. 2020 Dec 22;36(20):5076-5085. doi: 10.1093/bioinformatics/btaa624. Bioinformatics. 2020. PMID: 33026062 Free PMC article.

10

Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells.

St Laurent G, Shtokalo D, Tackett MR, Yang Z, Eremina T, Wahlestedt C, Urcuqui-Inchima S, Seilheimer B, McCaffrey TA, Kapranov P. St Laurent G, et al. Among authors: shtokalo d. BMC Genomics. 2012 Sep 24;13:504. doi: 10.1186/1471-2164-13-504. BMC Genomics. 2012. PMID: 23006825 Free PMC article.

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