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Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.
Peng K, Nowicki TS, Campbell K, Vahed M, Peng D, Meng Y, Nagareddy A, Huang YN, Karlsberg A, Miller Z, Brito J, Nadel B, Pak VM, Abedalthagafi MS, Burkhardt AM, Alachkar H, Ribas A, Mangul S. Peng K, et al. Among authors: vahed m. Brief Bioinform. 2023 Jul 20;24(4):bbad220. doi: 10.1093/bib/bbad220. Brief Bioinform. 2023. PMID: 37291798 Free PMC article.
Pioneering Computational Culture Within Pharmacy Schools by Empowering Students With Data Science and Bioinformatics Skills.
Ronkowski C, Deshpande D, Sharma N, Vahed M, Patel YM, Gukasyan HJ, Wu M, Peng K, Church TD, Kim RE, Mirzaian E, Padula WV, Tomaszewski D, Ng TMH, Wong-Beringer A, Zaro J, Qato DM, Davies DL, Papadopoulos V, Mangul S. Ronkowski C, et al. Among authors: vahed m. Am J Pharm Educ. 2024 Dec 12;89(2):101341. doi: 10.1016/j.ajpe.2024.101341. Online ahead of print. Am J Pharm Educ. 2024. PMID: 39674347
Analytical code sharing practices in biomedical research.
Sharma NK, Ayyala R, Deshpande D, Patel Y, Munteanu V, Ciorba D, Bostan V, Fiscutean A, Vahed M, Sarkar A, Guo R, Moore A, Darci-Maher N, Nogoy N, Abedalthagafi M, Mangul S. Sharma NK, et al. Among authors: vahed m. PeerJ Comput Sci. 2024 Jun 28;10:e2066. doi: 10.7717/peerj-cs.2066. eCollection 2024. PeerJ Comput Sci. 2024. PMID: 38983240 Free PMC article.
Genome sequencing of Pseudomonas aeruginosa phages; UF_RH7 and UF_RH9.
Hashemi Shahraki A, Vahed M, Mirsaeidi M. Hashemi Shahraki A, et al. Among authors: vahed m. Microbiol Resour Announc. 2024 Apr 11;13(4):e0105023. doi: 10.1128/mra.01050-23. Epub 2024 Mar 14. Microbiol Resour Announc. 2024. PMID: 38483455 Free PMC article.
Analytical code sharing practices in biomedical research.
Sharma NK, Ayyala R, Deshpande D, Patel YM, Munteanu V, Ciorba D, Fiscutean A, Vahed M, Sarkar A, Guo R, Moore A, Darci-Maher N, Nogoy NA, Abedalthagafi MS, Mangul S. Sharma NK, et al. Among authors: vahed m. bioRxiv [Preprint]. 2023 Aug 7:2023.07.31.551384. doi: 10.1101/2023.07.31.551384. bioRxiv. 2023. Update in: PeerJ Comput Sci. 2024 Jun 28;10:e2066. doi: 10.7717/peerj-cs.2066. PMID: 37609176 Free PMC article. Updated. Preprint.
Complete Genome Sequencing of a Novel Pseudomonas aeruginosa Phage, UF_RH5.
Hashemi Shahraki A, Vahed M, Dinparastisaleh R, Mirsaeidi M. Hashemi Shahraki A, et al. Among authors: vahed m. Microbiol Resour Announc. 2023 Jul 18;12(7):e0039623. doi: 10.1128/mra.00396-23. Epub 2023 Jun 20. Microbiol Resour Announc. 2023. PMID: 37338387 Free PMC article.
26 results