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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling.
Eché C, Iampietro C, Birbes C, Dréau A, Kuchly C, Di Franco A, Klopp C, Faraut T, Djebali S, Castinel A, Zytnicki M, Denis E, Boussaha M, Grohs C, Boichard D, Gaspin C, Milan D, Donnadieu C. Eché C, et al. Among authors: gaspin c. Sci Data. 2023 Jun 8;10(1):369. doi: 10.1038/s41597-023-02249-1. Sci Data. 2023. PMID: 37291142 Free PMC article.
srnaMapper: an optimal mapping tool for sRNA-Seq reads.
Zytnicki M, Gaspin C. Zytnicki M, et al. Among authors: gaspin c. BMC Bioinformatics. 2022 Nov 18;23(1):495. doi: 10.1186/s12859-022-05048-4. BMC Bioinformatics. 2022. PMID: 36401177 Free PMC article.
Massive detection of cryptic recessive genetic defects in dairy cattle mining millions of life histories.
Besnard F, Guintard A, Grohs C, Guzylack-Piriou L, Cano M, Escouflaire C, Hozé C, Leclerc H, Buronfosse T, Dutheil L, Jourdain J, Barbat A, Fritz S, Deloche MC, Remot A, Gaussères B, Clément A, Bouchier M, Contat E, Relun A, Plassard V, Rivière J, Péchoux C, Vilotte M, Eche C, Kuchly C, Charles M, Boulling A, Viard G, Minéry S, Barbey S, Birbes C, Danchin-Burge C, Launay F, Mattalia S, Allais-Bonnet A, Ravary B, Millemann Y, Guatteo R, Klopp C, Gaspin C, Iampietro C, Donnadieu C, Milan D, Arcangioli MA, Boussaha M, Foucras G, Boichard D, Capitan A. Besnard F, et al. Among authors: gaspin c. Genome Biol. 2024 Sep 30;25(1):248. doi: 10.1186/s13059-024-03384-7. Genome Biol. 2024. PMID: 39343954 Free PMC article.
Asterics: a simple tool for the ExploRation and Integration of omiCS data.
Maigné É, Noirot C, Henry J, Adu Kesewaah Y, Badin L, Déjean S, Guilmineau C, Krebs A, Mathevet F, Segalini A, Thomassin L, Colongo D, Gaspin C, Liaubet L, Vialaneix N. Maigné É, et al. Among authors: gaspin c. BMC Bioinformatics. 2023 Oct 18;24(1):391. doi: 10.1186/s12859-023-05504-9. BMC Bioinformatics. 2023. PMID: 37853347 Free PMC article.
mmannot: How to improve small-RNA annotation?
Zytnicki M, Gaspin C. Zytnicki M, et al. Among authors: gaspin c. PLoS One. 2020 May 28;15(5):e0231738. doi: 10.1371/journal.pone.0231738. eCollection 2020. PLoS One. 2020. PMID: 32463818 Free PMC article.
50 results