Hansen KD - Search Results

1

Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data.

Kuo A, Hansen KD, Hicks SC. Kuo A, et al. Among authors: hansen kd. Biostatistics. 2024 Jul 1;25(3):801-817. doi: 10.1093/biostatistics/kxad010. Biostatistics. 2024. PMID: 37257175 Free PMC article.

2

Removing technical variability in RNA-seq data using conditional quantile normalization.

Hansen KD, Irizarry RA, Wu Z. Hansen KD, et al. Biostatistics. 2012 Apr;13(2):204-16. doi: 10.1093/biostatistics/kxr054. Epub 2012 Jan 27. Biostatistics. 2012. PMID: 22285995 Free PMC article.

3

Differential expression analysis of RNA-seq data at single-base resolution.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT. Frazee AC, et al. Among authors: hansen kd. Biostatistics. 2014 Jul;15(3):413-26. doi: 10.1093/biostatistics/kxt053. Epub 2014 Jan 6. Biostatistics. 2014. PMID: 24398039 Free PMC article.

4

Addressing the mean-correlation relationship in co-expression analysis.

Wang Y, Hicks SC, Hansen KD. Wang Y, et al. Among authors: hansen kd. PLoS Comput Biol. 2022 Mar 30;18(3):e1009954. doi: 10.1371/journal.pcbi.1009954. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35353807 Free PMC article.

5

nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes.

Weber LM, Saha A, Datta A, Hansen KD, Hicks SC. Weber LM, et al. Among authors: hansen kd. Nat Commun. 2023 Jul 10;14(1):4059. doi: 10.1038/s41467-023-39748-z. Nat Commun. 2023. PMID: 37429865 Free PMC article.

6

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. Aryee MJ, et al. Among authors: hansen kd. Bioinformatics. 2014 May 15;30(10):1363-9. doi: 10.1093/bioinformatics/btu049. Epub 2014 Jan 28. Bioinformatics. 2014. PMID: 24478339 Free PMC article.

7

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.

Nellore A, Wilks C, Hansen KD, Leek JT, Langmead B. Nellore A, et al. Among authors: hansen kd. Bioinformatics. 2016 Aug 15;32(16):2551-3. doi: 10.1093/bioinformatics/btw177. Epub 2016 Apr 21. Bioinformatics. 2016. PMID: 27153614 Free PMC article.

8

Cloud-scale RNA-sequencing differential expression analysis with Myrna.

Langmead B, Hansen KD, Leek JT. Langmead B, et al. Among authors: hansen kd. Genome Biol. 2010;11(8):R83. doi: 10.1186/gb-2010-11-8-r83. Epub 2010 Aug 11. Genome Biol. 2010. PMID: 20701754 Free PMC article.

9

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.

Fortin JP, Triche TJ Jr, Hansen KD. Fortin JP, et al. Among authors: hansen kd. Bioinformatics. 2017 Feb 15;33(4):558-560. doi: 10.1093/bioinformatics/btw691. Bioinformatics. 2017. PMID: 28035024 Free PMC article.

10

Analyzing whole genome bisulfite sequencing data from highly divergent genotypes.

Wulfridge P, Langmead B, Feinberg AP, Hansen KD. Wulfridge P, et al. Among authors: hansen kd. Nucleic Acids Res. 2019 Nov 4;47(19):e117. doi: 10.1093/nar/gkz674. Nucleic Acids Res. 2019. PMID: 31392989 Free PMC article.

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