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Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging.
Moore SM, Quirk JD, Lassiter AW, Laforest R, Ayers GD, Badea CT, Fedorov AY, Kinahan PE, Holbrook M, Larson PEZ, Sriram R, Chenevert TL, Malyarenko D, Kurhanewicz J, Houghton AM, Ross BD, Pickup S, Gee JC, Zhou R, Gammon ST, Manning HC, Roudi R, Daldrup-Link HE, Lewis MT, Rubin DL, Yankeelov TE, Shoghi KI. Moore SM, et al. Among authors: gee jc. Tomography. 2023 May 11;9(3):995-1009. doi: 10.3390/tomography9030081. Tomography. 2023. PMID: 37218941 Free PMC article.
Merged magnetic resonance and light sheet microscopy of the whole mouse brain.
Johnson GA, Tian Y, Ashbrook DG, Cofer GP, Cook JJ, Gee JC, Hall A, Hornburg K, Kaczorowski CC, Qi Y, Yeh FC, Wang N, White LE, Williams RW. Johnson GA, et al. Among authors: gee jc. Proc Natl Acad Sci U S A. 2023 Apr 25;120(17):e2218617120. doi: 10.1073/pnas.2218617120. Epub 2023 Apr 17. Proc Natl Acad Sci U S A. 2023. PMID: 37068254 Free PMC article.
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain.
Yao Z, van Velthoven CTJ, Kunst M, Zhang M, McMillen D, Lee C, Jung W, Goldy J, Abdelhak A, Baker P, Barkan E, Bertagnolli D, Campos J, Carey D, Casper T, Chakka AB, Chakrabarty R, Chavan S, Chen M, Clark M, Close J, Crichton K, Daniel S, Dolbeare T, Ellingwood L, Gee J, Glandon A, Gloe J, Gould J, Gray J, Guilford N, Guzman J, Hirschstein D, Ho W, Jin K, Kroll M, Lathia K, Leon A, Long B, Maltzer Z, Martin N, McCue R, Meyerdierks E, Nguyen TN, Pham T, Rimorin C, Ruiz A, Shapovalova N, Slaughterbeck C, Sulc J, Tieu M, Torkelson A, Tung H, Cuevas NV, Wadhwani K, Ward K, Levi B, Farrell C, Thompson CL, Mufti S, Pagan CM, Kruse L, Dee N, Sunkin SM, Esposito L, Hawrylycz MJ, Waters J, Ng L, Smith KA, Tasic B, Zhuang X, Zeng H. Yao Z, et al. bioRxiv [Preprint]. 2023 Mar 6:2023.03.06.531121. doi: 10.1101/2023.03.06.531121. bioRxiv. 2023. Update in: Nature. 2023 Dec;624(7991):317-332. doi: 10.1038/s41586-023-06812-z PMID: 37034735 Free PMC article. Updated. Preprint.
Tau maturation in the clinicopathological spectrum of Lewy body and Alzheimer's disease.
Arezoumandan S, Cousins KAQ, Ohm DT, Lowe M, Chen M, Gee J, Phillips JS, McMillan CT, Luk KC, Deik A, Spindler MA, Tropea TF, Weintraub D, Wolk DA, Grossman M, Lee V, Chen-Plotkin AS, Lee EB, Irwin DJ. Arezoumandan S, et al. Ann Clin Transl Neurol. 2024 Mar;11(3):673-685. doi: 10.1002/acn3.51988. Epub 2024 Jan 23. Ann Clin Transl Neurol. 2024. PMID: 38263854 Free PMC article.
CT imaging-derived phenotypes for abdominal muscle and their association with age and sex in a medical biobank.
Vu PT, Chahine C, Chatterjee N, MacLean MT, Swago S, Bhattaru A, Thompson EW, Ikhlas A, Oteng E, Davidson L, Tran R, Hazim M, Raghupathy P, Verma A, Duda J, Gee J, Luks V, Gershuni V, Wu G, Rader D, Sagreiya H, Witschey WR; Penn Medicine Biobank. Vu PT, et al. Sci Rep. 2024 Jun 26;14(1):14807. doi: 10.1038/s41598-024-64603-6. Sci Rep. 2024. PMID: 38926479 Free PMC article.
Developmental mouse brain common coordinate framework.
Kronman FN, Liwang JK, Betty R, Vanselow DJ, Wu YT, Tustison NJ, Bhandiwad A, Manjila SB, Minteer JA, Shin D, Lee CH, Patil R, Duda JT, Xue J, Lin Y, Cheng KC, Puelles L, Gee JC, Zhang J, Ng L, Kim Y. Kronman FN, et al. Among authors: gee jc. Nat Commun. 2024 Oct 21;15(1):9072. doi: 10.1038/s41467-024-53254-w. Nat Commun. 2024. PMID: 39433760 Free PMC article.
Developmental Mouse Brain Common Coordinate Framework.
Kronman FA, Liwang JK, Betty R, Vanselow DJ, Wu YT, Tustison NJ, Bhandiwad A, Manjila SB, Minteer JA, Shin D, Lee CH, Patil R, Duda JT, Puelles L, Gee JC, Zhang J, Ng L, Kim Y. Kronman FA, et al. Among authors: gee jc. bioRxiv [Preprint]. 2023 Sep 15:2023.09.14.557789. doi: 10.1101/2023.09.14.557789. bioRxiv. 2023. Update in: Nat Commun. 2024 Oct 21;15(1):9072. doi: 10.1038/s41467-024-53254-w PMID: 37745386 Free PMC article. Updated. Preprint.
Automated Characterization of Abdominal MRI Exams Using Deep Learning.
Kim J, Chae A, Duda J, Borthakur A, Rader D, Gee JC, Kahn CE Jr, BioBank PM, Witschey WR, Sagreiya H. Kim J, et al. Among authors: gee jc. Res Sq [Preprint]. 2024 Dec 9:rs.3.rs-5334453. doi: 10.21203/rs.3.rs-5334453/v1. Res Sq. 2024. PMID: 39711527 Free PMC article. Preprint.
199 results