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RResolver: efficient short-read repeat resolution within ABySS.
Nikolić V, Afshinfard A, Chu J, Wong J, Coombe L, Nip KM, Warren RL, Birol I. Nikolić V, et al. Among authors: wong j. BMC Bioinformatics. 2022 Jun 21;23(1):246. doi: 10.1186/s12859-022-04790-z. BMC Bioinformatics. 2022. PMID: 35729491 Free PMC article.
Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes.
Gagalova KK, Warren RL, Coombe L, Wong J, Nip KM, Yuen MMS, Whitehill JGA, Celedon JM, Ritland C, Taylor GA, Cheng D, Plettner P, Hammond SA, Mohamadi H, Zhao Y, Moore RA, Mungall AJ, Boyle B, Laroche J, Cottrell J, Mackay JJ, Lamothe M, Gérardi S, Isabel N, Pavy N, Jones SJM, Bohlmann J, Bousquet J, Birol I. Gagalova KK, et al. Among authors: wong j. Plant J. 2022 Sep;111(5):1469-1485. doi: 10.1111/tpj.15889. Epub 2022 Jul 16. Plant J. 2022. PMID: 35789009 Free article.
ntHash2: recursive spaced seed hashing for nucleotide sequences.
Kazemi P, Wong J, Nikolić V, Mohamadi H, Warren RL, Birol I. Kazemi P, et al. Among authors: wong j. Bioinformatics. 2022 Oct 14;38(20):4812-4813. doi: 10.1093/bioinformatics/btac564. Bioinformatics. 2022. PMID: 36000872 Free PMC article.
aaHash: recursive amino acid sequence hashing.
Wong J, Kazemi P, Coombe L, Warren RL, Birol I. Wong J, et al. Bioinform Adv. 2023 Nov 11;3(1):vbad162. doi: 10.1093/bioadv/vbad162. eCollection 2023. Bioinform Adv. 2023. PMID: 38023332 Free PMC article.
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