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Ranked retrieval of Computational Biology models.
Henkel R, Endler L, Peters A, Le Novère N, Waltemath D. Henkel R, et al. BMC Bioinformatics. 2010 Aug 11;11:423. doi: 10.1186/1471-2105-11-423. BMC Bioinformatics. 2010. PMID: 20701772 Free PMC article.
Annotation-based feature extraction from sets of SBML models.
Alm R, Waltemath D, Wolfien M, Wolkenhauer O, Henkel R. Alm R, et al. Among authors: henkel r. J Biomed Semantics. 2015 Apr 15;6:20. doi: 10.1186/s13326-015-0014-4. eCollection 2015. J Biomed Semantics. 2015. PMID: 25904997 Free PMC article.
Notions of similarity for systems biology models.
Henkel R, Hoehndorf R, Kacprowski T, Knüpfer C, Liebermeister W, Waltemath D. Henkel R, et al. Brief Bioinform. 2018 Jan 1;19(1):77-88. doi: 10.1093/bib/bbw090. Brief Bioinform. 2018. PMID: 27742665 Free PMC article.
Notions of similarity for systems biology models.
Henkel R, Hoehndorf R, Kacprowski T, Knüpfer C, Liebermeister W, Waltemath D. Henkel R, et al. Brief Bioinform. 2017 Sep 1;18(5):902. doi: 10.1093/bib/bbw146. Brief Bioinform. 2017. PMID: 28096074 Free PMC article. No abstract available.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
279 results