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Page 1
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors.
Hoffmann M, Trummer N, Schwartz L, Jankowski J, Lee HK, Willruth LL, Lazareva O, Yuan K, Baumgarten N, Schmidt F, Baumbach J, Schulz MH, Blumenthal DB, Hennighausen L, List M. Hoffmann M, et al. Among authors: trummer n. Gigascience. 2022 Dec 28;12:giad026. doi: 10.1093/gigascience/giad026. Epub 2023 May 3. Gigascience. 2022. PMID: 37132521 Free PMC article.
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2.
Hoffmann M, Willruth LL, Dietrich A, Lee HK, Knabl L, Trummer N, Baumbach J, Furth PA, Hennighausen L, List M. Hoffmann M, et al. Among authors: trummer n. bioRxiv [Preprint]. 2023 Nov 6:2023.11.03.564190. doi: 10.1101/2023.11.03.564190. bioRxiv. 2023. Update in: Sci Rep. 2024 Feb 2;14(1):2808. doi: 10.1038/s41598-024-53117-w PMID: 38076885 Free PMC article. Updated. Preprint.
Network medicine-based epistasis detection in complex diseases: ready for quantum computing.
Hoffmann M, Poschenrieder JM, Incudini M, Baier S, Fitz A, Maier A, Hartung M, Hoffmann C, Trummer N, Adamowicz K, Picciani M, Scheibling E, Harl MV, Lesch I, Frey H, Kayser S, Wissenberg P, Schwartz L, Hafner L, Acharya A, Hackl L, Grabert G, Lee SG, Cho G, Cloward M, Jankowski J, Lee HK, Tsoy O, Wenke N, Pedersen AG, Bønnelykke K, Mandarino A, Melograna F, Schulz L, Climente-González H, Wilhelm M, Iapichino L, Wienbrandt L, Ellinghaus D, Van Steen K, Grossi M, Furth PA, Hennighausen L, Di Pierro A, Baumbach J, Kacprowski T, List M, Blumenthal DB. Hoffmann M, et al. Among authors: trummer n. medRxiv [Preprint]. 2023 Nov 9:2023.11.07.23298205. doi: 10.1101/2023.11.07.23298205. medRxiv. 2023. Update in: Nucleic Acids Res. 2024 Sep 23;52(17):10144-10160. doi: 10.1093/nar/gkae697 PMID: 38076997 Free PMC article. Updated. Preprint.
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pastrello C, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang RS, Zolotareva O, Baumbach J. Maier A, et al. Among authors: trummer n. Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388. Nucleic Acids Res. 2024. PMID: 38783119 Free PMC article.
Network medicine-based epistasis detection in complex diseases: ready for quantum computing.
Hoffmann M, Poschenrieder JM, Incudini M, Baier S, Fritz A, Maier A, Hartung M, Hoffmann C, Trummer N, Adamowicz K, Picciani M, Scheibling E, Harl MV, Lesch I, Frey H, Kayser S, Wissenberg P, Schwartz L, Hafner L, Acharya A, Hackl L, Grabert G, Lee SG, Cho G, Cloward ME, Jankowski J, Lee HK, Tsoy O, Wenke N, Pedersen AG, Bønnelykke K, Mandarino A, Melograna F, Schulz L, Climente-González H, Wilhelm M, Iapichino L, Wienbrandt L, Ellinghaus D, Van Steen K, Grossi M, Furth PA, Hennighausen L, Di Pierro A, Baumbach J, Kacprowski T, List M, Blumenthal DB. Hoffmann M, et al. Among authors: trummer n. Nucleic Acids Res. 2024 Sep 23;52(17):10144-10160. doi: 10.1093/nar/gkae697. Nucleic Acids Res. 2024. PMID: 39175109 Free PMC article.
Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang R, Zolotareva O, Baumbach J. Maier A, et al. Among authors: trummer n. ArXiv [Preprint]. 2023 Jul 4:arXiv:2305.15453v2. ArXiv. 2023. Update in: Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388 PMID: 37332567 Free PMC article. Updated. Preprint.
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging.
Hoffmann M, Schwartz L, Ciora OA, Trummer N, Willruth LL, Jankowski J, Lee HK, Baumbach J, Furth P, Hennighausen L, List M. Hoffmann M, et al. Among authors: trummer n. bioRxiv [Preprint]. 2023 Jun 23:2023.01.19.524495. doi: 10.1101/2023.01.19.524495. bioRxiv. 2023. Update in: Bioinform Adv. 2023 Jul 08;3(1):vbad093. doi: 10.1093/bioadv/vbad093 PMID: 36789427 Free PMC article. Updated. Preprint.
Characterization of Constituents with Potential Anti-Inflammatory Activity in Chinese Lonicera Species by UHPLC-HRMS Based Metabolite Profiling.
Pferschy-Wenzig EM, Ortmann S, Atanasov AG, Hellauer K, Hartler J, Kunert O, Gold-Binder M, Ladurner A, Heiß EH, Latkolik S, Zhao YM, Raab P, Monschein M, Trummer N, Samuel B, Crockett S, Miao JH, Thallinger GG, Bochkov V, Dirsch VM, Bauer R. Pferschy-Wenzig EM, et al. Among authors: trummer n. Metabolites. 2022 Mar 25;12(4):288. doi: 10.3390/metabo12040288. Metabolites. 2022. PMID: 35448474 Free PMC article.
12 results