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PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, Fasani RA, Tsalenko A, Tanjore D, Gardner J, Smith RD, Michener JK, Gladden JM, Baker ES, Petzold CJ, Kim YM, Apffel A, Magnuson JK, Burnum-Johnson KE. Bilbao A, et al. Among authors: petzold cj. Nat Commun. 2023 Apr 28;14(1):2461. doi: 10.1038/s41467-023-37031-9. Nat Commun. 2023. PMID: 37117207 Free PMC article.
A bacterial pioneer produces cellulase complexes that persist through community succession.
Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, Petzold CJ, Gladden JM, Simmons BA, Singer SW. Kolinko S, et al. Among authors: petzold cj. Nat Microbiol. 2018 Jan;3(1):99-107. doi: 10.1038/s41564-017-0052-z. Epub 2017 Nov 6. Nat Microbiol. 2018. PMID: 29109478 Free PMC article.
Response of Pseudomonas putida to Complex, Aromatic-Rich Fractions from Biomass.
Park MR, Chen Y, Thompson M, Benites VT, Fong B, Petzold CJ, Baidoo EEK, Gladden JM, Adams PD, Keasling JD, Simmons BA, Singer SW. Park MR, et al. Among authors: petzold cj. ChemSusChem. 2020 Sep 7;13(17):4455-4467. doi: 10.1002/cssc.202000268. Epub 2020 Apr 30. ChemSusChem. 2020. PMID: 32160408 Free article.
Machine learning for metabolic engineering: A review.
Lawson CE, Martí JM, Radivojevic T, Jonnalagadda SVR, Gentz R, Hillson NJ, Peisert S, Kim J, Simmons BA, Petzold CJ, Singer SW, Mukhopadhyay A, Tanjore D, Dunn JG, Garcia Martin H. Lawson CE, et al. Among authors: petzold cj. Metab Eng. 2021 Jan;63:34-60. doi: 10.1016/j.ymben.2020.10.005. Epub 2020 Nov 19. Metab Eng. 2021. PMID: 33221420 Free article. Review.
Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida.
Banerjee D, Yunus IS, Wang X, Kim J, Srinivasan A, Menchavez R, Chen Y, Gin JW, Petzold CJ, Martin HG, Magnuson JK, Adams PD, Simmons BA, Mukhopadhyay A, Kim J, Lee TS. Banerjee D, et al. Among authors: petzold cj. Metab Eng. 2024 Mar;82:157-170. doi: 10.1016/j.ymben.2024.02.004. Epub 2024 Feb 16. Metab Eng. 2024. PMID: 38369052 Free article.
161 results