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Page 1
The ENCODE Uniform Analysis Pipelines.
Hitz BC, Jin-Wook L, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Strattan JS, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, Ho M, Miyasato S, Simison M, Tanaka F, Luo Y, Whaling I, Hong EL, Lee BT, Sandstrom R, Rynes E, Nelson J, Nishida A, Ingersoll A, Buckley M, Frerker M, Kim DS, Boley N, Trout D, Dobin A, Rahmanian S, Wyman D, Balderrama-Gutierrez G, Reese F, Durand NC, Dudchenko O, Weisz D, Rao SSP, Blackburn A, Gkountaroulis D, Sadr M, Olshansky M, Eliaz Y, Nguyen D, Bochkov I, Shamim MS, Mahajan R, Aiden E, Gingeras T, Heath S, Hirst M, Kent WJ, Kundaje A, Mortazavi A, Wold B, Cherry JM. Hitz BC, et al. Among authors: hirst m. bioRxiv [Preprint]. 2023 Apr 6:2023.04.04.535623. doi: 10.1101/2023.04.04.535623. bioRxiv. 2023. PMID: 37066421 Free PMC article. Preprint.
Integrative analysis of 111 reference human epigenomes.
Roadmap Epigenomics Consortium; Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M. Roadmap Epigenomics Consortium, et al. Among authors: hirst m. Nature. 2015 Feb 19;518(7539):317-30. doi: 10.1038/nature14248. Nature. 2015. PMID: 25693563 Free PMC article.
SMARCB1 Loss in Poorly Differentiated Chordomas Drives Tumor Progression.
Walhart TA, Vacca B, Hepperla AJ, Hamad SH, Petrongelli J, Wang Y, McKean EL, Moksa M, Cao Q, Yip S, Hirst M, Weissman BE. Walhart TA, et al. Among authors: hirst m. Am J Pathol. 2023 Apr;193(4):456-473. doi: 10.1016/j.ajpath.2022.12.012. Epub 2023 Jan 16. Am J Pathol. 2023. PMID: 36657718 Free PMC article.
tp53 R217H and R242H mutant zebrafish exhibit dysfunctional p53 hallmarks and recapitulate Li-Fraumeni syndrome phenotypes.
Kobar K, Tuzi L, Fiene JA, Burnley E, Galpin KJC, Midgen C, Laverty B, Subasri V, Wen TT, Hirst M, Moksa M, Carles A, Cao Q, Shlien A, Malkin D, Prykhozhij SV, Berman JN. Kobar K, et al. Among authors: hirst m. Biochim Biophys Acta Mol Basis Dis. 2024 Dec 4;1871(3):167612. doi: 10.1016/j.bbadis.2024.167612. Online ahead of print. Biochim Biophys Acta Mol Basis Dis. 2024. PMID: 39643218 Free article.
REST-dependent glioma progression occurs independently of the repression of the long non-coding RNA HAR1A.
Waters E, Pucci P, Rahman R, Yatsyshyna AP, Porter H, Hirst M, Gromnicova R, Kraev I, Mongiardini V, Grimaldi B, Golding J, Fillmore HL, Győrffy B, Gangadharannambiar P, Velanis CN, Heath CJ, Crea F. Waters E, et al. Among authors: hirst m. PLoS One. 2024 Nov 27;19(11):e0312237. doi: 10.1371/journal.pone.0312237. eCollection 2024. PLoS One. 2024. PMID: 39602392 Free PMC article.
Synovial Sarcoma Chromatin Dynamics Reveal a Continuum in SS18:SSX Reprograming.
Hofvander J, Qiu A, Lee K, Bilenky M, Carles A, Cao Q, Moksa M, Steif J, Su E, Sotiriou A, Goytain A, Hill LA, Singer S, Andrulis IL, Wunder JS, Mertens F, Banito A, Jones KB, Underhill TM, Nielsen TO, Hirst M. Hofvander J, et al. Among authors: hirst m. bioRxiv [Preprint]. 2024 May 17:2024.05.14.594262. doi: 10.1101/2024.05.14.594262. bioRxiv. 2024. PMID: 38798672 Free PMC article. Preprint.
Remote consultations in community mental health: A qualitative study of clinical teams.
McCarron R, Moore A, Foreman I, Brewis E, Clarke O, Howes A, Parkin K, Luk D, Hirst MS, Sach E, Shipp A, Stahly L, Bhardwaj A. McCarron R, et al. Among authors: hirst ms. J Psychiatr Ment Health Nurs. 2024 Oct;31(5):857-868. doi: 10.1111/jpm.13044. Epub 2024 Mar 11. J Psychiatr Ment Health Nurs. 2024. PMID: 38462900
442 results