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A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2.
Carbo EC, Mourik K, Boers SA, Munnink BO, Nieuwenhuijse D, Jonges M, Welkers MRA, Matamoros S, van Harinxma Thoe Slooten J, Kraakman MEM, Karelioti E, van der Meer D, Veldkamp KE, Kroes ACM, Sidorov I, de Vries JJC. Carbo EC, et al. Among authors: nieuwenhuijse d. Eur J Clin Microbiol Infect Dis. 2023 Jun;42(6):701-713. doi: 10.1007/s10096-023-04590-0. Epub 2023 Apr 5. Eur J Clin Microbiol Infect Dis. 2023. PMID: 37017810 Free PMC article.
Studies into the mechanism of measles-associated immune suppression during a measles outbreak in the Netherlands.
Laksono BM, de Vries RD, Verburgh RJ, Visser EG, de Jong A, Fraaij PLA, Ruijs WLM, Nieuwenhuijse DF, van den Ham HJ, Koopmans MPG, van Zelm MC, Osterhaus ADME, de Swart RL. Laksono BM, et al. Among authors: nieuwenhuijse df. Nat Commun. 2018 Nov 23;9(1):4944. doi: 10.1038/s41467-018-07515-0. Nat Commun. 2018. PMID: 30470742 Free PMC article.
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.
Oude Munnink BB, Nieuwenhuijse DF, Stein M, O'Toole Á, Haverkate M, Mollers M, Kamga SK, Schapendonk C, Pronk M, Lexmond P, van der Linden A, Bestebroer T, Chestakova I, Overmars RJ, van Nieuwkoop S, Molenkamp R, van der Eijk AA, GeurtsvanKessel C, Vennema H, Meijer A, Rambaut A, van Dissel J, Sikkema RS, Timen A, Koopmans M; Dutch-Covid-19 response team. Oude Munnink BB, et al. Nat Med. 2020 Sep;26(9):1405-1410. doi: 10.1038/s41591-020-0997-y. Epub 2020 Jul 16. Nat Med. 2020. PMID: 32678356
Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond.
Schuele L, Boter M, Nieuwenhuijse DF, Götz H, Fanoy E, de Vries H, Vieyra B, Bavalia R, Hoornenborg E, Molenkamp R, Jonges M, van den Ouden A, Simões M, van den Lubben M, Koopmans M, Welkers MRA, Oude Munnink BB. Schuele L, et al. Among authors: nieuwenhuijse df. J Med Virol. 2024 Jan;96(1):e29397. doi: 10.1002/jmv.29397. J Med Virol. 2024. PMID: 38235923
COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.
Sikkema RS, Pas SD, Nieuwenhuijse DF, O'Toole Á, Verweij J, van der Linden A, Chestakova I, Schapendonk C, Pronk M, Lexmond P, Bestebroer T, Overmars RJ, van Nieuwkoop S, van den Bijllaardt W, Bentvelsen RG, van Rijen MML, Buiting AGM, van Oudheusden AJG, Diederen BM, Bergmans AMC, van der Eijk A, Molenkamp R, Rambaut A, Timen A, Kluytmans JAJW, Oude Munnink BB, Kluytmans van den Bergh MFQ, Koopmans MPG. Sikkema RS, et al. Among authors: nieuwenhuijse df. Lancet Infect Dis. 2020 Nov;20(11):1273-1280. doi: 10.1016/S1473-3099(20)30527-2. Epub 2020 Jul 2. Lancet Infect Dis. 2020. PMID: 32622380 Free PMC article.
Author Correction: Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.
Oude Munnink BB, Nieuwenhuijse DF, Stein M, O'Toole Á, Haverkate M, Mollers M, Kamga SK, Schapendonk C, Pronk M, Lexmond P, van der Linden A, Bestebroer T, Chestakova I, Overmars RJ, van Nieuwkoop S, Molenkamp R, van der Eijk AA, GeurtsvanKessel C, Vennema H, Meijer A, Rambaut A, van Dissel J, Sikkema RS, Timen A, Koopmans M; Dutch-Covid-19 response team. Oude Munnink BB, et al. Nat Med. 2020 Nov;26(11):1802. doi: 10.1038/s41591-020-1128-5. Nat Med. 2020. PMID: 33082576 Free PMC article.
A mixed-methods approach to elucidate SARS-CoV-2 transmission routes and clustering in outbreaks in native workers and labour migrants in the fruit and vegetable packaging industry in South Holland, the Netherlands, May to July 2020.
Boogaard LH, Sikkema RS, van Beek JHGM, Brockhoff HJ, Dalebout E, de Heus B, Niemansburg SL, Nieuwenhuijse DF, Stougje D, Verspui E, Oude Munnink BB, Koopmans MPG, Fanoy EB. Boogaard LH, et al. Among authors: nieuwenhuijse df. Int J Infect Dis. 2021 Aug;109:24-32. doi: 10.1016/j.ijid.2021.06.021. Epub 2021 Jun 15. Int J Infect Dis. 2021. PMID: 34139369 Free PMC article.
38 results