Zheng Z - Search Results

1

Evaluation of Mycobacterium tuberculosis enrichment in metagenomic samples using ONT adaptive sequencing and amplicon sequencing for identification and variant calling.

Su J, Lui WW, Lee Y, Zheng Z, Siu GK, Ng TT, Zhang T, Lam TT, Lao HY, Yam WC, Tam KK, Leung KS, Lam TW, Leung AW, Luo R. Su J, et al. Among authors: zheng z. Sci Rep. 2023 Mar 31;13(1):5237. doi: 10.1038/s41598-023-32378-x. Sci Rep. 2023. PMID: 37002338 Free PMC article.

2

Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era.

Xie S, Leung AW, Zheng Z, Zhang D, Xiao C, Luo R, Luo M, Zhang S. Xie S, et al. Among authors: zheng z. Innovation (Camb). 2021 Aug 11;2(4):100153. doi: 10.1016/j.xinn.2021.100153. eCollection 2021 Nov 28. Innovation (Camb). 2021. PMID: 34901902 Free PMC article. Review.

3

ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.

Leung AW, Leung HC, Wong CL, Zheng ZX, Lui WW, Luk HM, Lo IF, Luo R, Lam TW. Leung AW, et al. BMC Med Genomics. 2022 Mar 4;15(1):43. doi: 10.1186/s12920-022-01190-3. BMC Med Genomics. 2022. PMID: 35246132 Free PMC article.

4

Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks.

Su J, Zheng Z, Ahmed SS, Lam TW, Luo R. Su J, et al. Among authors: zheng z. Brief Bioinform. 2022 Sep 20;23(5):bbac301. doi: 10.1093/bib/bbac301. Brief Bioinform. 2022. PMID: 35849103 Free PMC article.

5

Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP.

Yu H, Zheng Z, Su J, Lam TW, Luo R. Yu H, et al. Among authors: zheng z. BMC Bioinformatics. 2023 Aug 3;24(1):308. doi: 10.1186/s12859-023-05434-6. BMC Bioinformatics. 2023. PMID: 37537536 Free PMC article.

6

Symphonizing pileup and full-alignment for deep learning-based long-read variant calling.

Zheng Z, Li S, Su J, Leung AW, Lam TW, Luo R. Zheng Z, et al. Nat Comput Sci. 2022 Dec;2(12):797-803. doi: 10.1038/s43588-022-00387-x. Epub 2022 Dec 19. Nat Comput Sci. 2022. PMID: 38177392

7

ClusterV-Web: a user-friendly tool for profiling HIV quasispecies and generating drug resistance reports from nanopore long-read data.

Su J, Li S, Zheng Z, Lam TW, Luo R. Su J, et al. Among authors: zheng z. Bioinform Adv. 2024 Jan 13;4(1):vbae006. doi: 10.1093/bioadv/vbae006. eCollection 2024. Bioinform Adv. 2024. PMID: 38282975 Free PMC article.

8

Repun: an accurate small variant representation unification method for multiple sequencing platforms.

Zheng Z, Ren Y, Chen L, Wong AOK, Li S, Yu X, Lam TW, Luo R. Zheng Z, et al. Brief Bioinform. 2024 Nov 22;26(1):bbae613. doi: 10.1093/bib/bbae613. Brief Bioinform. 2024. PMID: 39584701 Free PMC article.

9

Clair3-RNA: A deep learning-based small variant caller for long-read RNA sequencing data.

Zheng Z, Yu X, Chen L, Lee YL, Xin C, Wong AOK, Jain M, Kesharwani RK, Sedlazeck FJ, Luo R. Zheng Z, et al. bioRxiv [Preprint]. 2025 Jan 3:2024.11.17.624050. doi: 10.1101/2024.11.17.624050. bioRxiv. 2025. PMID: 39803537 Free PMC article. Preprint.

10

The impact of running experience and shoe longitudinal bending stiffness on lower extremity biomechanics: a cross-sectional study.

Gao S, Song Y, Sun D, Zheng Z, Chen H, Zhang Q, Xu Y, Gu Y. Gao S, et al. Among authors: zheng z. Acta Bioeng Biomech. 2025 Jan 28;26(2):93-103. doi: 10.37190/abb-02461-2024-03. Print 2024 Jun 1. Acta Bioeng Biomech. 2025. PMID: 39874504

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