Ma Q - Search Results

1

Dimension-agnostic and granularity-based spatially variable gene identification.

Wang J, Li J, Kramer S, Su L, Chang Y, Xu C, Ma Q, Xu D. Wang J, et al. Among authors: ma q. Res Sq [Preprint]. 2023 Mar 22:rs.3.rs-2687726. doi: 10.21203/rs.3.rs-2687726/v1. Res Sq. 2023. Update in: Nat Commun. 2023 Nov 14;14(1):7367. doi: 10.1038/s41467-023-43256-5 PMID: 36993309 Free PMC article. Updated. Preprint.

2

IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.

Ma A, Wang C, Chang Y, Brennan FH, McDermaid A, Liu B, Zhang C, Popovich PG, Ma Q. Ma A, et al. Among authors: ma q. Nucleic Acids Res. 2020 Jul 2;48(W1):W275-W286. doi: 10.1093/nar/gkaa394. Nucleic Acids Res. 2020. PMID: 32421805 Free PMC article.

3

Integrative Methods and Practical Challenges for Single-Cell Multi-omics.

Ma A, McDermaid A, Xu J, Chang Y, Ma Q. Ma A, et al. Among authors: ma q. Trends Biotechnol. 2020 Sep;38(9):1007-1022. doi: 10.1016/j.tibtech.2020.02.013. Epub 2020 Mar 26. Trends Biotechnol. 2020. PMID: 32818441 Free PMC article. Review.

4

Single-Cell Techniques and Deep Learning in Predicting Drug Response.

Wu Z, Lawrence PJ, Ma A, Zhu J, Xu D, Ma Q. Wu Z, et al. Among authors: ma a, ma q. Trends Pharmacol Sci. 2020 Dec;41(12):1050-1065. doi: 10.1016/j.tips.2020.10.004. Epub 2020 Nov 2. Trends Pharmacol Sci. 2020. PMID: 33153777 Free PMC article. Review.

5

Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks.

Wang J, Ma A, Ma Q, Xu D, Joshi T. Wang J, et al. Among authors: ma a, ma q. Comput Struct Biotechnol J. 2020 Nov 5;18:3335-3343. doi: 10.1016/j.csbj.2020.10.022. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 33294129 Free PMC article.

6

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis.

Chang Y, Allen C, Wan C, Chung D, Zhang C, Li Z, Ma Q. Chang Y, et al. Among authors: ma q. Bioinformatics. 2021 Sep 29;37(18):3045-3047. doi: 10.1093/bioinformatics/btab108. Bioinformatics. 2021. PMID: 33595622 Free PMC article.

7

scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses.

Wang J, Ma A, Chang Y, Gong J, Jiang Y, Qi R, Wang C, Fu H, Ma Q, Xu D. Wang J, et al. Among authors: ma a, ma q. Nat Commun. 2021 Mar 25;12(1):1882. doi: 10.1038/s41467-021-22197-x. Nat Commun. 2021. PMID: 33767197 Free PMC article.

8

Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data.

Zhang S, Ma A, Zhao J, Xu D, Ma Q, Wang Y. Zhang S, et al. Among authors: ma a, ma q. Brief Bioinform. 2022 Jan 17;23(1):bbab374. doi: 10.1093/bib/bbab374. Brief Bioinform. 2022. PMID: 34607350 Free PMC article.

9

Treatment with soluble CD24 attenuates COVID-19-associated systemic immunopathology.

Song NJ, Allen C, Vilgelm AE, Riesenberg BP, Weller KP, Reynolds K, Chakravarthy KB, Kumar A, Khatiwada A, Sun Z, Ma A, Chang Y, Yusuf M, Li A, Zeng C, Evans JP, Bucci D, Gunasena M, Xu M, Liyanage NPM, Bolyard C, Velegraki M, Liu SL, Ma Q, Devenport M, Liu Y, Zheng P, Malvestutto CD, Chung D, Li Z. Song NJ, et al. Among authors: ma a, ma q. J Hematol Oncol. 2022 Jan 10;15(1):5. doi: 10.1186/s13045-021-01222-y. J Hematol Oncol. 2022. PMID: 35012610 Free PMC article. Clinical Trial.

10

Deep learning shapes single-cell data analysis.

Ma Q, Xu D. Ma Q, et al. Nat Rev Mol Cell Biol. 2022 May;23(5):303-304. doi: 10.1038/s41580-022-00466-x. Nat Rev Mol Cell Biol. 2022. PMID: 35197610 Free PMC article.

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