Brunet MA - Search Results

1

OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases.

Guilloy N, Brunet MA, Leblanc S, Jacques JF, Hardy MP, Ehx G, Lanoix J, Thibault P, Perreault C, Roucou X. Guilloy N, et al. Among authors: brunet ma. J Proteome Res. 2023 May 5;22(5):1492-1500. doi: 10.1021/acs.jproteome.3c00054. Epub 2023 Mar 24. J Proteome Res. 2023. PMID: 36961377 Free PMC article.

2

Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship.

Brunet MA, Levesque SA, Hunting DJ, Cohen AA, Roucou X. Brunet MA, et al. Genome Res. 2018 May;28(5):609-624. doi: 10.1101/gr.230938.117. Epub 2018 Apr 6. Genome Res. 2018. PMID: 29626081 Free PMC article. Review.

3

OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.

Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar JD, Dufour P, Jacques JF, Fournier I, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Brunet MA, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D403-D410. doi: 10.1093/nar/gky936. Nucleic Acids Res. 2019. PMID: 30299502 Free PMC article.

4

Mass Spectrometry-Based Proteomics Analyses Using the OpenProt Database to Unveil Novel Proteins Translated from Non-Canonical Open Reading Frames.

Brunet MA, Roucou X. Brunet MA, et al. J Vis Exp. 2019 Apr 11;(146). doi: 10.3791/59589. J Vis Exp. 2019. PMID: 31033953

5

UBB pseudogene 4 encodes functional ubiquitin variants.

Dubois ML, Meller A, Samandi S, Brunelle M, Frion J, Brunet MA, Toupin A, Beaudoin MC, Jacques JF, Lévesque D, Scott MS, Lavigne P, Roucou X, Boisvert FM. Dubois ML, et al. Among authors: brunet ma. Nat Commun. 2020 Mar 11;11(1):1306. doi: 10.1038/s41467-020-15090-6. Nat Commun. 2020. PMID: 32161257 Free PMC article.

6

Reconsidering proteomic diversity with functional investigation of small ORFs and alternative ORFs.

Brunet MA, Leblanc S, Roucou X. Brunet MA, et al. Exp Cell Res. 2020 Aug 1;393(1):112057. doi: 10.1016/j.yexcr.2020.112057. Epub 2020 May 6. Exp Cell Res. 2020. PMID: 32387289 Free article. Review.

7

How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource.

Brunet MA, Lekehal AM, Roucou X. Brunet MA, et al. Curr Protoc Bioinformatics. 2020 Sep;71(1):e103. doi: 10.1002/cpbi.103. Curr Protoc Bioinformatics. 2020. PMID: 32780568

8

Modelling of pathogen-host systems using deeper ORF annotations and transcriptomics to inform proteomics analyses.

Leblanc S, Brunet MA. Leblanc S, et al. Among authors: brunet ma. Comput Struct Biotechnol J. 2020 Oct 14;18:2836-2850. doi: 10.1016/j.csbj.2020.10.010. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 33133425 Free PMC article.

9

OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.

Brunet MA, Lucier JF, Levesque M, Leblanc S, Jacques JF, Al-Saedi HRH, Guilloy N, Grenier F, Avino M, Fournier I, Salzet M, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Brunet MA, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D380-D388. doi: 10.1093/nar/gkaa1036. Nucleic Acids Res. 2021. PMID: 33179748 Free PMC article.

10

The FUS gene is dual-coding with both proteins contributing to FUS-mediated toxicity.

Brunet MA, Jacques JF, Nassari S, Tyzack GE, McGoldrick P, Zinman L, Jean S, Robertson J, Patani R, Roucou X. Brunet MA, et al. EMBO Rep. 2021 Jan 7;22(1):e50640. doi: 10.15252/embr.202050640. Epub 2020 Nov 23. EMBO Rep. 2021. PMID: 33226175 Free PMC article.

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