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RNA splicing analysis using heterogeneous and large RNA-seq datasets.
Vaquero-Garcia J, Aicher JK, Jewell S, Gazzara MR, Radens CM, Jha A, Norton SS, Lahens NF, Grant GR, Barash Y. Vaquero-Garcia J, et al. Nat Commun. 2023 Mar 3;14(1):1230. doi: 10.1038/s41467-023-36585-y. Nat Commun. 2023. PMID: 36869033 Free PMC article.
PRiMeUM: A Model for Predicting Risk of Metastasis in Uveal Melanoma.
Vaquero-Garcia J, Lalonde E, Ewens KG, Ebrahimzadeh J, Richard-Yutz J, Shields CL, Barrera A, Green CJ, Barash Y, Ganguly A. Vaquero-Garcia J, et al. Invest Ophthalmol Vis Sci. 2017 Aug 1;58(10):4096-4105. doi: 10.1167/iovs.17-22255. Invest Ophthalmol Vis Sci. 2017. PMID: 28828481 Free PMC article.
Splicing code modeling.
Barash Y, Vaquero-Garcia J. Barash Y, et al. Among authors: vaquero garcia j. Adv Exp Med Biol. 2014;825:451-66. doi: 10.1007/978-1-4939-1221-6_13. Adv Exp Med Biol. 2014. PMID: 25201114 Review.
In silico to in vivo splicing analysis using splicing code models.
Gazzara MR, Vaquero-Garcia J, Lynch KW, Barash Y. Gazzara MR, et al. Among authors: vaquero garcia j. Methods. 2014 May 1;67(1):3-12. doi: 10.1016/j.ymeth.2013.11.006. Epub 2013 Dec 7. Methods. 2014. PMID: 24321485 Free PMC article.