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121 results

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Transkingdom Network Analysis (TkNA): a systems framework for inferring causal factors underlying host-microbiota and other multi-omic interactions.
Newman NK, Macovsky M, Rodrigues RR, Bruce AM, Pederson JW, Patil SS, Padiadpu J, Dzutsev AK, Shulzhenko N, Trinchieri G, Brown K, Morgun A. Newman NK, et al. Among authors: morgun a. bioRxiv [Preprint]. 2023 Mar 29:2023.02.22.529449. doi: 10.1101/2023.02.22.529449. bioRxiv. 2023. Update in: Nat Protoc. 2024 Jun;19(6):1750-1778. doi: 10.1038/s41596-024-00960-w PMID: 36865280 Free PMC article. Updated. Preprint.
Transkingdom Network Analysis (TkNA): a systems framework for inferring causal factors underlying host-microbiota and other multi-omic interactions.
Newman NK, Macovsky MS, Rodrigues RR, Bruce AM, Pederson JW, Padiadpu J, Shan J, Williams J, Patil SS, Dzutsev AK, Shulzhenko N, Trinchieri G, Brown K, Morgun A. Newman NK, et al. Among authors: morgun a. Nat Protoc. 2024 Jun;19(6):1750-1778. doi: 10.1038/s41596-024-00960-w. Epub 2024 Mar 12. Nat Protoc. 2024. PMID: 38472495 Review.
Host response to cholestyramine can be mediated by the gut microbiota.
Newman NK, Monnier PM, Rodrigues RR, Gurung M, Vasquez-Perez S, Hioki KA, Greer RL, Brown K, Morgun A, Shulzhenko N. Newman NK, et al. Among authors: morgun a. Microbiome Res Rep. 2024 Jul 11;3(4):40. doi: 10.20517/mrr.2023.82. eCollection 2024. Microbiome Res Rep. 2024. PMID: 39741955 Free PMC article.
Multi-omic network analysis identified betacellulin as a novel target of omega-3 fatty acid attenuation of western diet-induced nonalcoholic steatohepatitis.
Padiadpu J, Garcia-Jaramillo M, Newman NK, Pederson JW, Rodrigues R, Li Z, Singh S, Monnier P, Trinchieri G, Brown K, Dzutsev AK, Shulzhenko N, Jump DB, Morgun A. Padiadpu J, et al. Among authors: morgun a. EMBO Mol Med. 2023 Nov 8;15(11):e18367. doi: 10.15252/emmm.202318367. Epub 2023 Oct 20. EMBO Mol Med. 2023. PMID: 37859621 Free PMC article.
Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome.
Newman NK, Zhang Y, Padiadpu J, Miranda CL, Magana AA, Wong CP, Hioki KA, Pederson JW, Li Z, Gurung M, Bruce AM, Brown K, Bobe G, Sharpton TJ, Shulzhenko N, Maier CS, Stevens JF, Gombart AF, Morgun A. Newman NK, et al. Among authors: morgun a. Microbiome. 2023 Sep 21;11(1):208. doi: 10.1186/s40168-023-01637-4. Microbiome. 2023. PMID: 37735685 Free PMC article.
Early transcriptome changes associated with western diet induced NASH in Ldlr-/- mice points to activation of hepatic macrophages and an acute phase response.
Padiadpu J, Spooner MH, Li Z, Newman N, Löhr CV, Apperson KD, Dzutsev A, Trinchieri G, Shulzhenko N, Morgun A, Jump DB. Padiadpu J, et al. Among authors: morgun a. Front Nutr. 2023 Aug 7;10:1147602. doi: 10.3389/fnut.2023.1147602. eCollection 2023. Front Nutr. 2023. PMID: 37609485 Free PMC article.
GATA4 controls regionalization of tissue immunity and commensal-driven immunopathology.
Earley ZM, Lisicka W, Sifakis JJ, Aguirre-Gamboa R, Kowalczyk A, Barlow JT, Shaw DG, Discepolo V, Tan IL, Gona S, Ernest JD, Matzinger P, Barreiro LB, Morgun A, Bendelac A, Ismagilov RF, Shulzhenko N, Riesenfeld SJ, Jabri B. Earley ZM, et al. Among authors: morgun a. Immunity. 2023 Jan 10;56(1):43-57.e10. doi: 10.1016/j.immuni.2022.12.009. Immunity. 2023. PMID: 36630917 Free PMC article.
121 results