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Page 1
Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota).
Dirks AC, Methven AS, Miller AN, Orozco-Quime M, Maurice S, Bonito G, Van Wyk J, Ahrendt S, Kuo A, Andreopoulos W, Riley R, Lipzen A, Chovatia M, Savage E, Barry K, Grigoriev IV, Bradshaw AJ, Martin FM, Elizabeth Arnold A, James TY. Dirks AC, et al. Among authors: andreopoulos w. Mol Phylogenet Evol. 2025 Jan 7:108286. doi: 10.1016/j.ympev.2025.108286. Online ahead of print. Mol Phylogenet Evol. 2025. PMID: 39788220
Evolutionary genomic analyses of canine E. coli infections identify a relic capsular locus associated with resistance to multiple classes of antimicrobials.
Ceres K, Zehr JD, Murrell C, Millet JK, Sun Q, McQueary HC, Horton A, Cazer C, Sams K, Reboul G, Andreopoulos WB, Mitchell PK, Anderson R, Franklin-Guild R, Cronk BD, Stanhope BJ, Burbick CR, Wolking R, Peak L, Zhang Y, McDowall R, Krishnamurthy A, Slavic D, Sekhon Pk, Tyson GH, Ceric O, Stanhope MJ, Goodman LB. Ceres K, et al. Among authors: andreopoulos wb. Appl Environ Microbiol. 2024 Aug 21;90(8):e0035424. doi: 10.1128/aem.00354-24. Epub 2024 Jul 16. Appl Environ Microbiol. 2024. PMID: 39012166 Free PMC article.
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
Baroncelli R, Cobo-Díaz JF, Benocci T, Peng M, Battaglia E, Haridas S, Andreopoulos W, LaButti K, Pangilinan J, Lipzen A, Koriabine M, Bauer D, Le Floch G, Mäkelä MR, Drula E, Henrissat B, Grigoriev IV, Crouch JA, de Vries RP, Sukno SA, Thon MR. Baroncelli R, et al. Among authors: andreopoulos w. Gigascience. 2024 Jan 2;13:giae036. doi: 10.1093/gigascience/giae036. Gigascience. 2024. PMID: 38940768 Free PMC article.
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR. Czajka JJ, et al. Among authors: andreopoulos w. Front Bioeng Biotechnol. 2024 Apr 4;12:1356551. doi: 10.3389/fbioe.2024.1356551. eCollection 2024. Front Bioeng Biotechnol. 2024. PMID: 38638323 Free PMC article.
Environment-specific virocell metabolic reprogramming.
Howard-Varona C, Lindback MM, Fudyma JD, Krongauz A, Solonenko NE, Zayed AA, Andreopoulos WB, Olson HM, Kim YM, Kyle JE, Glavina Del Rio T, Adkins JN, Tfaily MM, Paul S, Sullivan MB, Duhaime MB. Howard-Varona C, et al. Among authors: andreopoulos wb. ISME J. 2024 Jan 8;18(1):wrae055. doi: 10.1093/ismejo/wrae055. ISME J. 2024. PMID: 38552150 Free PMC article.
A global phylogenomic analysis of the shiitake genus Lentinula.
Sierra-Patev S, Min B, Naranjo-Ortiz M, Looney B, Konkel Z, Slot JC, Sakamoto Y, Steenwyk JL, Rokas A, Carro J, Camarero S, Ferreira P, Molpeceres G, Ruiz-Dueñas FJ, Serrano A, Henrissat B, Drula E, Hughes KW, Mata JL, Ishikawa NK, Vargas-Isla R, Ushijima S, Smith CA, Donoghue J, Ahrendt S, Andreopoulos W, He G, LaButti K, Lipzen A, Ng V, Riley R, Sandor L, Barry K, Martínez AT, Xiao Y, Gibbons JG, Terashima K, Grigoriev IV, Hibbett D. Sierra-Patev S, et al. Among authors: andreopoulos w. Proc Natl Acad Sci U S A. 2023 Mar 7;120(10):e2214076120. doi: 10.1073/pnas.2214076120. Epub 2023 Feb 27. Proc Natl Acad Sci U S A. 2023. PMID: 36848567 Free PMC article.
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
Plett JM, Miyauchi S, Morin E, Plett K, Wong-Bajracharya J, de Freitas Pereira M, Kuo A, Henrissat B, Drula E, Wojtalewicz D, Riley R, Pangilinan J, Andreopoulos W, LaButti K, Daum C, Yoshinaga Y, Fauchery L, Ng V, Lipzen A, Barry K, Singan V, Guo J, Lebel T, Costa MD, Grigoriev IV, Martin F, Anderson IC, Kohler A. Plett JM, et al. Among authors: andreopoulos w. Mol Biol Evol. 2023 Mar 4;40(3):msad045. doi: 10.1093/molbev/msad045. Mol Biol Evol. 2023. PMID: 36811946 Free PMC article.
Diploid-dominant life cycles characterize the early evolution of Fungi.
Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY. Amses KR, et al. Among authors: andreopoulos w. Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119. Epub 2022 Aug 29. Proc Natl Acad Sci U S A. 2022. PMID: 36037379 Free PMC article.
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW. Chang Y, et al. Among authors: andreopoulos w. iScience. 2022 Aug 2;25(8):104840. doi: 10.1016/j.isci.2022.104840. eCollection 2022 Aug 19. iScience. 2022. PMID: 35996588 Free PMC article.
Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes.
Zhang J, Shen N, Li C, Xiang X, Liu G, Gui Y, Patev S, Hibbett DS, Barry K, Andreopoulos W, Lipzen A, Riley R, He G, Yan M, Grigoriev IV, Shan Kwan H, Kit Cheung M, Bian Y, Xiao Y. Zhang J, et al. Among authors: andreopoulos w. J Adv Res. 2021 Sep 28;38:91-106. doi: 10.1016/j.jare.2021.09.008. eCollection 2022 May. J Adv Res. 2021. PMID: 35572413 Free PMC article.
22 results