Hoopmann MR - Search Results

1

Integrating Genetics, Transcriptomics, and Proteomics in Lung Tissue to Investigate Chronic Obstructive Pulmonary Disease.

Zhang YH, Cho MH, Morrow JD, Castaldi PJ, Hersh CP, Midha MK, Hoopmann MR, Lutz SM, Moritz RL, Silverman EK. Zhang YH, et al. Among authors: hoopmann mr. Am J Respir Cell Mol Biol. 2023 Jun;68(6):651-663. doi: 10.1165/rcmb.2022-0302OC. Am J Respir Cell Mol Biol. 2023. PMID: 36780661 Free PMC article.

2

Nanospray FAIMS fractionation provides significant increases in proteome coverage of unfractionated complex protein digests.

Swearingen KE, Hoopmann MR, Johnson RS, Saleem RA, Aitchison JD, Moritz RL. Swearingen KE, et al. Among authors: hoopmann mr. Mol Cell Proteomics. 2012 Apr;11(4):M111.014985. doi: 10.1074/mcp.M111.014985. Epub 2011 Dec 20. Mol Cell Proteomics. 2012. PMID: 22186714 Free PMC article.

3

Identification of peptide features in precursor spectra using Hardklör and Krönik.

Hoopmann MR, MacCoss MJ, Moritz RL. Hoopmann MR, et al. Curr Protoc Bioinformatics. 2012 Mar;Chapter 13:Unit13.18. doi: 10.1002/0471250953.bi1318s37. Curr Protoc Bioinformatics. 2012. PMID: 22389013 Free PMC article.

4

Current algorithmic solutions for peptide-based proteomics data generation and identification.

Hoopmann MR, Moritz RL. Hoopmann MR, et al. Curr Opin Biotechnol. 2013 Feb;24(1):31-8. doi: 10.1016/j.copbio.2012.10.013. Epub 2012 Nov 8. Curr Opin Biotechnol. 2013. PMID: 23142544 Free PMC article. Review.

5

The state of the human proteome in 2012 as viewed through PeptideAtlas.

Farrah T, Deutsch EW, Hoopmann MR, Hallows JL, Sun Z, Huang CY, Moritz RL. Farrah T, et al. Among authors: hoopmann mr. J Proteome Res. 2013 Jan 4;12(1):162-71. doi: 10.1021/pr301012j. Epub 2012 Dec 5. J Proteome Res. 2013. PMID: 23215161 Free PMC article.

6

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework.

Lewis S, Csordas A, Killcoyne S, Hermjakob H, Hoopmann MR, Moritz RL, Deutsch EW, Boyle J. Lewis S, et al. Among authors: hoopmann mr. BMC Bioinformatics. 2012 Dec 5;13:324. doi: 10.1186/1471-2105-13-324. BMC Bioinformatics. 2012. PMID: 23216909 Free PMC article.

7

Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex.

Tien JF, Umbreit NT, Zelter A, Riffle M, Hoopmann MR, Johnson RS, Fonslow BR, Yates JR 3rd, MacCoss MJ, Moritz RL, Asbury CL, Davis TN. Tien JF, et al. Among authors: hoopmann mr. Genetics. 2014 Dec;198(4):1483-93. doi: 10.1534/genetics.114.167775. Epub 2014 Sep 16. Genetics. 2014. PMID: 25230952 Free PMC article.

8

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.

Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, Guignard C, Schupp JM, Vlassis N, Baliga NS, Moritz RL, Keim PS, Wilmes P. Muller EE, et al. Among authors: hoopmann mr. Nat Commun. 2014 Nov 26;5:5603. doi: 10.1038/ncomms6603. Nat Commun. 2014. PMID: 25424998 Free PMC article.

9

Kojak: efficient analysis of chemically cross-linked protein complexes.

Hoopmann MR, Zelter A, Johnson RS, Riffle M, MacCoss MJ, Davis TN, Moritz RL. Hoopmann MR, et al. J Proteome Res. 2015 May 1;14(5):2190-8. doi: 10.1021/pr501321h. Epub 2015 Apr 15. J Proteome Res. 2015. PMID: 25812159 Free PMC article.

10

Quantitative proteogenomic profiling of epidermal barrier formation in vitro.

Winget JM, Watts JD, Hoopmann MR, DiColandrea T, Robinson MK, Huggins T, Bascom CC, Isfort RJ, Moritz RL. Winget JM, et al. Among authors: hoopmann mr. J Dermatol Sci. 2015 Jun;78(3):173-80. doi: 10.1016/j.jdermsci.2015.02.013. Epub 2015 Mar 14. J Dermatol Sci. 2015. PMID: 25862149 Free PMC article.

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