Mirauta B - Search Results

1

Transcriptome architecture and regulation at environmental transitions in flavobacteria: the case of an important fish pathogen.

Guérin C, Lee BH, Fradet B, van Dijk E, Mirauta B, Thermes C, Bernardet JF, Repoila F, Duchaud E, Nicolas P, Rochat T. Guérin C, et al. Among authors: mirauta b. ISME Commun. 2021 Jul 7;1(1):33. doi: 10.1038/s43705-021-00029-9. ISME Commun. 2021. PMID: 36739365 Free PMC article.

2

Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome.

Brenes AJ, Yoshikawa H, Bensaddek D, Mirauta B, Seaton D, Hukelmann JL, Jiang H, Stegle O, Lamond AI. Brenes AJ, et al. Among authors: mirauta b. Cell Rep. 2021 Apr 27;35(4):109032. doi: 10.1016/j.celrep.2021.109032. Cell Rep. 2021. PMID: 33910018 Free PMC article.

3

Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics.

Bonder MJ, Smail C, Gloudemans MJ, Frésard L, Jakubosky D, D'Antonio M, Li X, Ferraro NM, Carcamo-Orive I, Mirauta B, Seaton DD, Cai N, Vakili D, Horta D, Zhao C, Zastrow DB, Bonner DE; HipSci Consortium; iPSCORE consortium; Undiagnosed Diseases Network; PhLiPS consortium; Wheeler MT, Kilpinen H, Knowles JW, Smith EN, Frazer KA, Montgomery SB, Stegle O. Bonder MJ, et al. Among authors: mirauta b. Nat Genet. 2021 Mar;53(3):313-321. doi: 10.1038/s41588-021-00800-7. Epub 2021 Mar 4. Nat Genet. 2021. PMID: 33664507 Free PMC article.

4

Population-scale proteome variation in human induced pluripotent stem cells.

Mirauta BA, Seaton DD, Bensaddek D, Brenes A, Bonder MJ, Kilpinen H; HipSci Consortium; Stegle O, Lamond AI. Mirauta BA, et al. Elife. 2020 Aug 10;9:e57390. doi: 10.7554/eLife.57390. Elife. 2020. PMID: 32773033 Free PMC article.

5

Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats.

Jakubosky D, Smith EN, D'Antonio M, Jan Bonder M, Young Greenwald WW, D'Antonio-Chronowska A, Matsui H; i2QTL Consortium; Stegle O, Montgomery SB, DeBoever C, Frazer KA. Jakubosky D, et al. Nat Commun. 2020 Jun 10;11(1):2928. doi: 10.1038/s41467-020-16481-5. Nat Commun. 2020. PMID: 32522985 Free PMC article.

6

Properties of structural variants and short tandem repeats associated with gene expression and complex traits.

Jakubosky D, D'Antonio M, Bonder MJ, Smail C, Donovan MKR, Young Greenwald WW, Matsui H; i2QTL Consortium; D'Antonio-Chronowska A, Stegle O, Smith EN, Montgomery SB, DeBoever C, Frazer KA. Jakubosky D, et al. Nat Commun. 2020 Jun 10;11(1):2927. doi: 10.1038/s41467-020-16482-4. Nat Commun. 2020. PMID: 32522982 Free PMC article.

7

Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes.

McCarthy DJ, Rostom R, Huang Y, Kunz DJ, Danecek P, Bonder MJ, Hagai T, Lyu R; HipSci Consortium; Wang W, Gaffney DJ, Simons BD, Stegle O, Teichmann SA. McCarthy DJ, et al. Nat Methods. 2020 Apr;17(4):414-421. doi: 10.1038/s41592-020-0766-3. Epub 2020 Mar 16. Nat Methods. 2020. PMID: 32203388

8

Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels.

Sousa A, Gonçalves E, Mirauta B, Ochoa D, Stegle O, Beltrao P. Sousa A, et al. Among authors: mirauta b. Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S114-S125. doi: 10.1074/mcp.RA118.001280. Epub 2019 Jun 25. Mol Cell Proteomics. 2019. PMID: 31239291 Free PMC article.

9

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models.

Mirauta B, Nicolas P, Richard H. Mirauta B, et al. Bioinformatics. 2014 May 15;30(10):1409-16. doi: 10.1093/bioinformatics/btu042. Epub 2014 Jan 27. Bioinformatics. 2014. PMID: 24470570

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