Backofen R - Search Results

1

Distinct SARS-CoV-2 RNA fragments activate Toll-like receptors 7 and 8 and induce cytokine release from human macrophages and microglia.

Wallach T, Raden M, Hinkelmann L, Brehm M, Rabsch D, Weidling H, Krüger C, Kettenmann H, Backofen R, Lehnardt S. Wallach T, et al. Among authors: backofen r. Front Immunol. 2023 Jan 13;13:1066456. doi: 10.3389/fimmu.2022.1066456. eCollection 2022. Front Immunol. 2023. PMID: 36713399 Free PMC article.

2

Interactive implementations of thermodynamics-based RNA structure and RNA-RNA interaction prediction approaches for example-driven teaching.

Raden M, Mohamed MM, Ali SM, Backofen R. Raden M, et al. Among authors: backofen r. PLoS Comput Biol. 2018 Aug 30;14(8):e1006341. doi: 10.1371/journal.pcbi.1006341. eCollection 2018 Aug. PLoS Comput Biol. 2018. PMID: 30161123 Free PMC article.

3

Integration of accessibility data from structure probing into RNA-RNA interaction prediction.

Miladi M, Montaseri S, Backofen R, Raden M. Miladi M, et al. Among authors: backofen r. Bioinformatics. 2019 Aug 15;35(16):2862-2864. doi: 10.1093/bioinformatics/bty1029. Bioinformatics. 2019. PMID: 30590479 Free PMC article.

4

ShaKer: RNA SHAPE prediction using graph kernel.

Mautner S, Montaseri S, Miladi M, Raden M, Costa F, Backofen R. Mautner S, et al. Among authors: backofen r. Bioinformatics. 2019 Jul 15;35(14):i354-i359. doi: 10.1093/bioinformatics/btz395. Bioinformatics. 2019. PMID: 31510707 Free PMC article.

5

IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction.

Gelhausen R, Will S, Hofacker IL, Backofen R, Raden M. Gelhausen R, et al. Among authors: backofen r. J Bioinform Comput Biol. 2019 Oct;17(5):1940009. doi: 10.1142/S0219720019400092. J Bioinform Comput Biol. 2019. PMID: 31856671

6

The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment.

Raden M, Müller T, Mautner S, Gelhausen R, Backofen R. Raden M, et al. Among authors: backofen r. BMC Bioinformatics. 2020 Jan 13;21(1):15. doi: 10.1186/s12859-019-3143-4. BMC Bioinformatics. 2020. PMID: 31931703 Free PMC article.

7

MutaRNA: analysis and visualization of mutation-induced changes in RNA structure.

Miladi M, Raden M, Diederichs S, Backofen R. Miladi M, et al. Among authors: backofen r. Nucleic Acids Res. 2020 Jul 2;48(W1):W287-W291. doi: 10.1093/nar/gkaa331. Nucleic Acids Res. 2020. PMID: 32392303 Free PMC article.

8

CopomuS-Ranking Compensatory Mutations to Guide RNA-RNA Interaction Verification Experiments.

Raden M, Gutmann F, Uhl M, Backofen R. Raden M, et al. Among authors: backofen r. Int J Mol Sci. 2020 May 28;21(11):3852. doi: 10.3390/ijms21113852. Int J Mol Sci. 2020. PMID: 32481751 Free PMC article.

9

Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains.

Miladi M, Raden M, Will S, Backofen R. Miladi M, et al. Among authors: backofen r. Algorithms Mol Biol. 2020 Nov 13;15(1):19. doi: 10.1186/s13015-020-00179-w. Algorithms Mol Biol. 2020. PMID: 33292340 Free PMC article.

10

CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems.

Alkhnbashi OS, Mitrofanov A, Bonidia R, Raden M, Tran VD, Eggenhofer F, Shah SA, Öztürk E, Padilha VA, Sanches DS, de Carvalho ACPLF, Backofen R. Alkhnbashi OS, et al. Among authors: backofen r. Nucleic Acids Res. 2021 Jul 2;49(W1):W125-W130. doi: 10.1093/nar/gkab456. Nucleic Acids Res. 2021. PMID: 34133710 Free PMC article.

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